Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC12.89□□□□□ -0.35
LMO4P61968 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC12.89□□□□□ -0.35
LMO4P61968 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
LMO4P61968 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC12.89□□□□□ -0.35
LMO4P61968 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 WT1-209ENST00000530998 2421 ntTSL 2 BASIC12.89□□□□□ -0.35
LMO4P61968 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 AC099336.1-201ENST00000417053 1171 ntBASIC12.89□□□□□ -0.35
LMO4P61968 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC12.89□□□□□ -0.35
LMO4P61968 AC016694.1-201ENST00000434179 700 ntBASIC12.89□□□□□ -0.35
LMO4P61968 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC12.89□□□□□ -0.35
LMO4P61968 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC12.89□□□□□ -0.35
LMO4P61968 CSF2RBP1-201ENST00000447905 391 ntBASIC12.89□□□□□ -0.35
LMO4P61968 FTH1P14-201ENST00000482930 551 ntBASIC12.89□□□□□ -0.35
LMO4P61968 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC12.89□□□□□ -0.35
LMO4P61968 AC106760.1-201ENST00000508690 800 ntBASIC12.89□□□□□ -0.35
LMO4P61968 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC12.89□□□□□ -0.35
LMO4P61968 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC12.89□□□□□ -0.35
LMO4P61968 AP001582.1-201ENST00000525856 295 ntBASIC12.89□□□□□ -0.35
LMO4P61968 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC12.89□□□□□ -0.35
LMO4P61968 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC12.89□□□□□ -0.35
LMO4P61968 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC12.89□□□□□ -0.35
LMO4P61968 KSR1-207ENST00000578981 748 ntTSL 4 BASIC12.89□□□□□ -0.35
LMO4P61968 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC12.89□□□□□ -0.35
LMO4P61968 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC12.89□□□□□ -0.35
LMO4P61968 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC12.89□□□□□ -0.35
LMO4P61968 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
LMO4P61968 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC12.89□□□□□ -0.35
LMO4P61968 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
LMO4P61968 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
LMO4P61968 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LMO4P61968 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LMO4P61968 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
LMO4P61968 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LMO4P61968 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LMO4P61968 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
LMO4P61968 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC12.88□□□□□ -0.35
LMO4P61968 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
LMO4P61968 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LMO4P61968 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
LMO4P61968 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC12.88□□□□□ -0.35
LMO4P61968 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LMO4P61968 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LMO4P61968 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC12.88□□□□□ -0.35
LMO4P61968 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC12.88□□□□□ -0.35
LMO4P61968 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LMO4P61968 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LMO4P61968 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC12.88□□□□□ -0.35
LMO4P61968 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LMO4P61968 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC12.88□□□□□ -0.35
LMO4P61968 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC12.88□□□□□ -0.35
LMO4P61968 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC12.88□□□□□ -0.35
LMO4P61968 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC12.88□□□□□ -0.35
LMO4P61968 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
LMO4P61968 FO681548.1-201ENST00000455617 1132 ntBASIC12.88□□□□□ -0.35
LMO4P61968 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC12.88□□□□□ -0.35
LMO4P61968 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC12.88□□□□□ -0.35
LMO4P61968 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC12.88□□□□□ -0.35
LMO4P61968 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC12.88□□□□□ -0.35
LMO4P61968 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC12.88□□□□□ -0.35
LMO4P61968 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC12.88□□□□□ -0.35
LMO4P61968 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC12.88□□□□□ -0.35
LMO4P61968 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC12.88□□□□□ -0.35
LMO4P61968 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LMO4P61968 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LMO4P61968 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LMO4P61968 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
LMO4P61968 AL138799.1-201ENST00000448213 1675 ntBASIC12.88□□□□□ -0.35
LMO4P61968 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC12.88□□□□□ -0.35
LMO4P61968 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC12.88□□□□□ -0.35
LMO4P61968 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC12.88□□□□□ -0.35
LMO4P61968 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LMO4P61968 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
LMO4P61968 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LMO4P61968 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LMO4P61968 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.35
LMO4P61968 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LMO4P61968 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC12.88□□□□□ -0.35
LMO4P61968 BLK-205ENST00000529894 2017 ntTSL 5 BASIC12.88□□□□□ -0.35
LMO4P61968 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LMO4P61968 REXO1L6P-201ENST00000603433 1515 ntBASIC12.88□□□□□ -0.35
LMO4P61968 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms