Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLDN6P56747 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLDN6P56747 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.15■□□□□ 0.02
CLDN6P56747 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 AC078925.2-201ENST00000624013 1973 ntBASIC15.15■□□□□ 0.02
CLDN6P56747 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 HLA-A-202ENST00000376806 1854 ntBASIC15.15■□□□□ 0.02
CLDN6P56747 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.15■□□□□ 0.02
CLDN6P56747 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.15■□□□□ 0.02
CLDN6P56747 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CLDN6P56747 EEF1DP4-201ENST00000446006 880 ntBASIC15.15■□□□□ 0.02
CLDN6P56747 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.15■□□□□ 0.02
CLDN6P56747 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC15.15■□□□□ 0.02
CLDN6P56747 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC15.15■□□□□ 0.02
CLDN6P56747 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC15.15■□□□□ 0.02
CLDN6P56747 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC15.15■□□□□ 0.02
CLDN6P56747 FAM86HP-204ENST00000513466 959 ntBASIC15.15■□□□□ 0.02
CLDN6P56747 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC15.15■□□□□ 0.02
CLDN6P56747 AC243562.2-201ENST00000561247 970 ntBASIC15.15■□□□□ 0.02
CLDN6P56747 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 GNRHR2-203ENST00000581100 1187 ntBASIC15.15■□□□□ 0.02
CLDN6P56747 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.15■□□□□ 0.02
CLDN6P56747 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CLDN6P56747 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLDN6P56747 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
CLDN6P56747 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
CLDN6P56747 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.15■□□□□ 0.02
CLDN6P56747 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC15.14■□□□□ 0.01
CLDN6P56747 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.14■□□□□ 0.01
CLDN6P56747 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.14■□□□□ 0.01
CLDN6P56747 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CLDN6P56747 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLDN6P56747 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLDN6P56747 AGGF1P2-201ENST00000426656 2106 ntBASIC15.14■□□□□ 0.01
CLDN6P56747 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLDN6P56747 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLDN6P56747 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.14■□□□□ 0.01
CLDN6P56747 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.14■□□□□ 0.01
CLDN6P56747 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLDN6P56747 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLDN6P56747 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.14■□□□□ 0.01
CLDN6P56747 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CLDN6P56747 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.14■□□□□ 0.01
CLDN6P56747 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLDN6P56747 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLDN6P56747 AL118508.1-201ENST00000613502 2345 ntBASIC15.14■□□□□ 0.01
CLDN6P56747 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.14■□□□□ 0.01
CLDN6P56747 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLDN6P56747 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC15.14■□□□□ 0.01
CLDN6P56747 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
CLDN6P56747 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLDN6P56747 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
CLDN6P56747 AGER-203ENST00000375065 665 ntTSL 2 BASIC15.14■□□□□ 0.01
CLDN6P56747 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CLDN6P56747 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC15.14■□□□□ 0.01
CLDN6P56747 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CLDN6P56747 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC15.14■□□□□ 0.01
CLDN6P56747 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.14■□□□□ 0.01
CLDN6P56747 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLDN6P56747 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
CLDN6P56747 RNA5SP423-201ENST00000517127 109 ntBASIC15.14■□□□□ 0.01
CLDN6P56747 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLDN6P56747 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.14■□□□□ 0.01
CLDN6P56747 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.14■□□□□ 0.01
CLDN6P56747 RETN-203ENST00000629642 400 ntTSL 5 BASIC15.14■□□□□ 0.01
CLDN6P56747 RHOXF1P1-202ENST00000635473 501 ntBASIC15.14■□□□□ 0.01
CLDN6P56747 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLDN6P56747 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLDN6P56747 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLDN6P56747 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
CLDN6P56747 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CLDN6P56747 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLDN6P56747 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.14■□□□□ 0.01
CLDN6P56747 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CLDN6P56747 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLDN6P56747 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLDN6P56747 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CLDN6P56747 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
CLDN6P56747 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.13■□□□□ 0.01
CLDN6P56747 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLDN6P56747 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLDN6P56747 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms