Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AP001160.2-201ENST00000596071 487 ntBASIC16.5■□□□□ 0.23
CDH6P55285 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH6P55285 AL133215.2-201ENST00000609242 977 ntBASIC16.5■□□□□ 0.23
CDH6P55285 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH6P55285 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH6P55285 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.5■□□□□ 0.23
CDH6P55285 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH6P55285 AC009090.5-201ENST00000624886 2285 ntBASIC16.5■□□□□ 0.23
CDH6P55285 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH6P55285 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CDH6P55285 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH6P55285 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH6P55285 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH6P55285 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH6P55285 DBET-201ENST00000630918 3363 ntBASIC16.5■□□□□ 0.23
CDH6P55285 TMBIM7P-203ENST00000641617 1718 ntBASIC16.5■□□□□ 0.23
CDH6P55285 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH6P55285 AL035456.1-201ENST00000456064 1369 ntBASIC16.5■□□□□ 0.23
CDH6P55285 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH6P55285 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.49■□□□□ 0.23
CDH6P55285 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CDH6P55285 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH6P55285 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH6P55285 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH6P55285 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH6P55285 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH6P55285 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH6P55285 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.49■□□□□ 0.23
CDH6P55285 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH6P55285 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH6P55285 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH6P55285 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH6P55285 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH6P55285 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CDH6P55285 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.49■□□□□ 0.23
CDH6P55285 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH6P55285 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH6P55285 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.49■□□□□ 0.23
CDH6P55285 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH6P55285 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.49■□□□□ 0.23
CDH6P55285 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.49■□□□□ 0.23
CDH6P55285 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.49■□□□□ 0.23
CDH6P55285 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CDH6P55285 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.49■□□□□ 0.23
CDH6P55285 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.49■□□□□ 0.23
CDH6P55285 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
CDH6P55285 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.49■□□□□ 0.23
CDH6P55285 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH6P55285 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.49■□□□□ 0.23
CDH6P55285 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CDH6P55285 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.49■□□□□ 0.23
CDH6P55285 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH6P55285 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH6P55285 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CDH6P55285 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CDH6P55285 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH6P55285 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CDH6P55285 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CDH6P55285 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH6P55285 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.48■□□□□ 0.23
CDH6P55285 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CDH6P55285 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH6P55285 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH6P55285 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH6P55285 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH6P55285 HLA-J-203ENST00000494367 1087 ntBASIC16.48■□□□□ 0.23
CDH6P55285 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 AL512356.2-201ENST00000546955 174 ntBASIC16.48■□□□□ 0.23
CDH6P55285 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.48■□□□□ 0.23
CDH6P55285 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH6P55285 LINC00628-201ENST00000628516 1289 ntBASIC16.48■□□□□ 0.23
CDH6P55285 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CDH6P55285 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CDH6P55285 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
CDH6P55285 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CDH6P55285 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH6P55285 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH6P55285 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.48■□□□□ 0.23
CDH6P55285 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms