Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LIMK1P53667 SNX33P1-201ENST00000592116 1762 ntBASIC15.59■□□□□ 0.09
LIMK1P53667 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
LIMK1P53667 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.59■□□□□ 0.09
LIMK1P53667 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.59■□□□□ 0.09
LIMK1P53667 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.59■□□□□ 0.09
LIMK1P53667 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.59■□□□□ 0.09
LIMK1P53667 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC15.59■□□□□ 0.09
LIMK1P53667 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.59■□□□□ 0.09
LIMK1P53667 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 OLR1-203ENST00000432556 950 ntTSL 2 BASIC15.59■□□□□ 0.09
LIMK1P53667 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC15.59■□□□□ 0.09
LIMK1P53667 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.59■□□□□ 0.09
LIMK1P53667 AC004898.1-201ENST00000451057 766 ntBASIC15.59■□□□□ 0.09
LIMK1P53667 Z93015.1-201ENST00000451718 390 ntBASIC15.59■□□□□ 0.09
LIMK1P53667 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC15.59■□□□□ 0.09
LIMK1P53667 UPF3AP2-201ENST00000457924 1132 ntBASIC15.59■□□□□ 0.09
LIMK1P53667 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC15.59■□□□□ 0.09
LIMK1P53667 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC15.59■□□□□ 0.09
LIMK1P53667 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC15.59■□□□□ 0.09
LIMK1P53667 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC15.59■□□□□ 0.09
LIMK1P53667 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC15.59■□□□□ 0.09
LIMK1P53667 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC15.59■□□□□ 0.09
LIMK1P53667 LINC01115-203ENST00000606068 577 ntBASIC15.59■□□□□ 0.09
LIMK1P53667 PRKN-211ENST00000615065 261 ntTSL 5 BASIC15.59■□□□□ 0.09
LIMK1P53667 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 AC134312.5-201ENST00000568031 1313 ntBASIC15.59■□□□□ 0.09
LIMK1P53667 GRN-222ENST00000639447 1314 ntTSL 2 BASIC15.59■□□□□ 0.09
LIMK1P53667 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
LIMK1P53667 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
LIMK1P53667 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
LIMK1P53667 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.58■□□□□ 0.09
LIMK1P53667 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.09
LIMK1P53667 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.58■□□□□ 0.09
LIMK1P53667 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.58■□□□□ 0.08
LIMK1P53667 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LIMK1P53667 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LIMK1P53667 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.58■□□□□ 0.08
LIMK1P53667 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LIMK1P53667 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIMK1P53667 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIMK1P53667 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LIMK1P53667 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LIMK1P53667 HINT2P1-201ENST00000419438 481 ntBASIC15.58■□□□□ 0.08
LIMK1P53667 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC15.58■□□□□ 0.08
LIMK1P53667 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC15.58■□□□□ 0.08
LIMK1P53667 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LIMK1P53667 RPL13P2-201ENST00000440687 659 ntBASIC15.58■□□□□ 0.08
LIMK1P53667 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIMK1P53667 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC15.58■□□□□ 0.08
LIMK1P53667 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
LIMK1P53667 AP001063.1-201ENST00000568332 529 ntBASIC15.58■□□□□ 0.08
LIMK1P53667 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LIMK1P53667 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.58■□□□□ 0.08
LIMK1P53667 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIMK1P53667 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.58■□□□□ 0.08
LIMK1P53667 HR-201ENST00000312841 5351 ntTSL 5 BASIC15.58■□□□□ 0.08
LIMK1P53667 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LIMK1P53667 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIMK1P53667 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIMK1P53667 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LIMK1P53667 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.58■□□□□ 0.08
LIMK1P53667 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIMK1P53667 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIMK1P53667 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIMK1P53667 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.58■□□□□ 0.08
LIMK1P53667 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
LIMK1P53667 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
LIMK1P53667 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
LIMK1P53667 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.58■□□□□ 0.08
LIMK1P53667 CYP4F24P-201ENST00000586049 1580 ntBASIC15.58■□□□□ 0.08
LIMK1P53667 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK1P53667 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK1P53667 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK1P53667 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK1P53667 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.57■□□□□ 0.08
LIMK1P53667 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK1P53667 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK1P53667 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LIMK1P53667 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms