Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXA1P49639 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC13.25□□□□□ -0.29
HOXA1P49639 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXA1P49639 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
HOXA1P49639 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.25□□□□□ -0.29
HOXA1P49639 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXA1P49639 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXA1P49639 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 ELK2BP-201ENST00000415014 1224 ntBASIC13.25□□□□□ -0.29
HOXA1P49639 SLC25A6P2-201ENST00000497974 877 ntBASIC13.25□□□□□ -0.29
HOXA1P49639 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC13.25□□□□□ -0.29
HOXA1P49639 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXA1P49639 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC13.25□□□□□ -0.29
HOXA1P49639 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXA1P49639 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXA1P49639 AC005412.3-201ENST00000580309 715 ntBASIC13.25□□□□□ -0.29
HOXA1P49639 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
HOXA1P49639 RPS15-207ENST00000591032 550 ntTSL 3 BASIC13.25□□□□□ -0.29
HOXA1P49639 RPS15-212ENST00000593052 629 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXA1P49639 AC008608.2-201ENST00000606089 416 ntBASIC13.25□□□□□ -0.29
HOXA1P49639 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
HOXA1P49639 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC13.25□□□□□ -0.29
HOXA1P49639 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC13.25□□□□□ -0.29
HOXA1P49639 AL805961.1-202ENST00000641562 540 ntBASIC13.25□□□□□ -0.29
HOXA1P49639 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
HOXA1P49639 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXA1P49639 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
HOXA1P49639 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
HOXA1P49639 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 AL390755.1-201ENST00000623716 2027 ntBASIC13.25□□□□□ -0.29
HOXA1P49639 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.25□□□□□ -0.29
HOXA1P49639 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
HOXA1P49639 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.25□□□□□ -0.29
HOXA1P49639 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC13.25□□□□□ -0.29
HOXA1P49639 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 SLC22A20-204ENST00000530038 1673 ntBASIC13.24□□□□□ -0.29
HOXA1P49639 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
HOXA1P49639 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC13.24□□□□□ -0.29
HOXA1P49639 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC13.24□□□□□ -0.29
HOXA1P49639 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC13.24□□□□□ -0.29
HOXA1P49639 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
HOXA1P49639 PAN3-AS1-201ENST00000563843 1351 ntBASIC13.24□□□□□ -0.29
HOXA1P49639 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
HOXA1P49639 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
HOXA1P49639 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC13.24□□□□□ -0.29
HOXA1P49639 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 HCG4-201ENST00000418983 998 ntBASIC13.24□□□□□ -0.29
HOXA1P49639 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 SART3-203ENST00000546611 1184 ntBASIC13.24□□□□□ -0.29
HOXA1P49639 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC13.24□□□□□ -0.29
HOXA1P49639 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC13.24□□□□□ -0.29
HOXA1P49639 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC13.24□□□□□ -0.29
HOXA1P49639 AC006557.2-201ENST00000592985 1240 ntBASIC13.24□□□□□ -0.29
HOXA1P49639 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC13.24□□□□□ -0.29
HOXA1P49639 AL355877.3-201ENST00000622820 899 ntBASIC13.24□□□□□ -0.29
HOXA1P49639 Z82170.1-201ENST00000625081 3192 ntBASIC13.24□□□□□ -0.29
HOXA1P49639 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC13.24□□□□□ -0.29
HOXA1P49639 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
HOXA1P49639 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 STK40-201ENST00000359297 4837 ntTSL 2 BASIC13.24□□□□□ -0.29
HOXA1P49639 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC13.24□□□□□ -0.29
HOXA1P49639 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC13.24□□□□□ -0.29
HOXA1P49639 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms