Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
RFX3P48380 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
RFX3P48380 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
RFX3P48380 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
RFX3P48380 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 AC134407.2-201ENST00000625089 1978 ntBASIC14.97□□□□□ -0.01
RFX3P48380 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 MIR346-201ENST00000362234 95 ntBASIC14.97□□□□□ -0.01
RFX3P48380 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
RFX3P48380 FAM58DP-201ENST00000428076 619 ntBASIC14.97□□□□□ -0.01
RFX3P48380 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC14.97□□□□□ -0.01
RFX3P48380 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC14.97□□□□□ -0.01
RFX3P48380 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
RFX3P48380 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.97□□□□□ -0.01
RFX3P48380 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC14.97□□□□□ -0.01
RFX3P48380 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
RFX3P48380 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.97□□□□□ -0.01
RFX3P48380 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
RFX3P48380 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 AP3S2-216ENST00000617003 1561 ntBASIC14.97□□□□□ -0.01
RFX3P48380 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
RFX3P48380 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.97□□□□□ -0.01
RFX3P48380 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
RFX3P48380 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RFX3P48380 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.97□□□□□ -0.01
RFX3P48380 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
RFX3P48380 AC023824.1-201ENST00000562945 2975 ntBASIC14.97□□□□□ -0.01
RFX3P48380 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.97□□□□□ -0.01
RFX3P48380 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
RFX3P48380 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
RFX3P48380 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC14.96□□□□□ -0.01
RFX3P48380 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
RFX3P48380 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
RFX3P48380 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
RFX3P48380 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
RFX3P48380 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
RFX3P48380 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.96□□□□□ -0.01
RFX3P48380 AC068418.2-201ENST00000577309 3703 ntBASIC14.96□□□□□ -0.01
RFX3P48380 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
RFX3P48380 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
RFX3P48380 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
RFX3P48380 MBP-202ENST00000355994 2772 ntTSL 5 BASIC14.96□□□□□ -0.01
RFX3P48380 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
RFX3P48380 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
RFX3P48380 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
RFX3P48380 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
RFX3P48380 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
RFX3P48380 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.96□□□□□ -0.01
RFX3P48380 DNAJB3-202ENST00000449667 1266 ntBASIC14.96□□□□□ -0.01
RFX3P48380 AC023141.5-201ENST00000458585 616 ntBASIC14.96□□□□□ -0.01
RFX3P48380 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
RFX3P48380 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.96□□□□□ -0.01
RFX3P48380 AC093520.2-201ENST00000561830 333 ntBASIC14.96□□□□□ -0.01
RFX3P48380 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC14.96□□□□□ -0.01
RFX3P48380 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC14.96□□□□□ -0.01
RFX3P48380 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC14.96□□□□□ -0.01
RFX3P48380 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
RFX3P48380 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
RFX3P48380 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
RFX3P48380 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
RFX3P48380 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.02
RFX3P48380 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.02
RFX3P48380 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
RFX3P48380 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.96□□□□□ -0.02
RFX3P48380 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
RFX3P48380 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.96□□□□□ -0.02
RFX3P48380 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.96□□□□□ -0.02
RFX3P48380 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
RFX3P48380 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
RFX3P48380 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC14.95□□□□□ -0.02
RFX3P48380 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC14.95□□□□□ -0.02
RFX3P48380 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC14.95□□□□□ -0.02
RFX3P48380 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
RFX3P48380 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.95□□□□□ -0.02
RFX3P48380 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
RFX3P48380 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.95□□□□□ -0.02
RFX3P48380 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
RFX3P48380 AC069224.1-201ENST00000566372 1715 ntBASIC14.95□□□□□ -0.02
RFX3P48380 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.95□□□□□ -0.02
RFX3P48380 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
RFX3P48380 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms