Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 MPV17-208ENST00000405076 603 ntTSL 5 BASIC18.03■□□□□ 0.48
SMARCA1P28370 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC18.03■□□□□ 0.48
SMARCA1P28370 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC18.03■□□□□ 0.48
SMARCA1P28370 AL596325.1-201ENST00000563991 1082 ntBASIC18.03■□□□□ 0.48
SMARCA1P28370 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC18.03■□□□□ 0.48
SMARCA1P28370 CTBP2P3-201ENST00000585629 1255 ntBASIC18.03■□□□□ 0.48
SMARCA1P28370 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC18.03■□□□□ 0.48
SMARCA1P28370 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC18.03■□□□□ 0.48
SMARCA1P28370 AC105233.6-201ENST00000642093 218 ntBASIC18.03■□□□□ 0.48
SMARCA1P28370 DRD5P1-201ENST00000456605 1438 ntBASIC18.03■□□□□ 0.48
SMARCA1P28370 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SMARCA1P28370 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
SMARCA1P28370 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC18.03■□□□□ 0.48
SMARCA1P28370 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.03■□□□□ 0.48
SMARCA1P28370 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
SMARCA1P28370 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC18.03■□□□□ 0.48
SMARCA1P28370 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SMARCA1P28370 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SMARCA1P28370 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SMARCA1P28370 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SMARCA1P28370 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC18.02■□□□□ 0.48
SMARCA1P28370 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SMARCA1P28370 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SMARCA1P28370 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SMARCA1P28370 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SMARCA1P28370 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SMARCA1P28370 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SMARCA1P28370 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SMARCA1P28370 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC18.02■□□□□ 0.48
SMARCA1P28370 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SMARCA1P28370 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SMARCA1P28370 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SMARCA1P28370 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SMARCA1P28370 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SMARCA1P28370 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC18.02■□□□□ 0.48
SMARCA1P28370 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC18.02■□□□□ 0.48
SMARCA1P28370 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC18.02■□□□□ 0.48
SMARCA1P28370 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC18.02■□□□□ 0.48
SMARCA1P28370 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC18.02■□□□□ 0.48
SMARCA1P28370 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SMARCA1P28370 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC18.02■□□□□ 0.48
SMARCA1P28370 AL049840.4-201ENST00000602422 811 ntBASIC18.02■□□□□ 0.48
SMARCA1P28370 AC025181.2-201ENST00000606994 802 ntBASIC18.02■□□□□ 0.48
SMARCA1P28370 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
SMARCA1P28370 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC18.02■□□□□ 0.48
SMARCA1P28370 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
SMARCA1P28370 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC18.02■□□□□ 0.47
SMARCA1P28370 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SMARCA1P28370 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
SMARCA1P28370 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SMARCA1P28370 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SMARCA1P28370 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SMARCA1P28370 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
SMARCA1P28370 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
SMARCA1P28370 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMARCA1P28370 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
SMARCA1P28370 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMARCA1P28370 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC18.01■□□□□ 0.47
SMARCA1P28370 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC18.01■□□□□ 0.47
SMARCA1P28370 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SMARCA1P28370 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMARCA1P28370 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
SMARCA1P28370 WARS-232ENST00000556645 2508 ntTSL 5 BASIC18.01■□□□□ 0.47
SMARCA1P28370 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMARCA1P28370 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMARCA1P28370 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC18.01■□□□□ 0.47
SMARCA1P28370 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMARCA1P28370 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.01■□□□□ 0.47
SMARCA1P28370 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMARCA1P28370 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SMARCA1P28370 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SMARCA1P28370 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC18.01■□□□□ 0.47
SMARCA1P28370 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
SMARCA1P28370 GALT-202ENST00000450095 1280 ntTSL 2 BASIC18.01■□□□□ 0.47
SMARCA1P28370 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
SMARCA1P28370 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC18.01■□□□□ 0.47
SMARCA1P28370 AP005018.1-201ENST00000525475 301 ntBASIC18.01■□□□□ 0.47
SMARCA1P28370 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC18.01■□□□□ 0.47
SMARCA1P28370 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SMARCA1P28370 AC093813.1-201ENST00000605066 256 ntBASIC18.01■□□□□ 0.47
SMARCA1P28370 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
SMARCA1P28370 GPR39-203ENST00000622084 900 ntTSL 5 BASIC18.01■□□□□ 0.47
SMARCA1P28370 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
SMARCA1P28370 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMARCA1P28370 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
SMARCA1P28370 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
SMARCA1P28370 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC18.01■□□□□ 0.47
SMARCA1P28370 HNRNPA1P48-201ENST00000562726 1377 ntBASIC18.01■□□□□ 0.47
SMARCA1P28370 TNRC18P3-201ENST00000441896 2691 ntBASIC18.01■□□□□ 0.47
SMARCA1P28370 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms