Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A2P12110 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A2P12110 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A2P12110 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A2P12110 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A2P12110 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A2P12110 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
COL6A2P12110 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.68■□□□□ 0.1
COL6A2P12110 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A2P12110 ADH5P3-201ENST00000433842 1137 ntBASIC15.68■□□□□ 0.1
COL6A2P12110 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.68■□□□□ 0.1
COL6A2P12110 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A2P12110 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.68■□□□□ 0.1
COL6A2P12110 LINC01225-203ENST00000563550 1244 ntBASIC15.68■□□□□ 0.1
COL6A2P12110 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.68■□□□□ 0.1
COL6A2P12110 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A2P12110 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
COL6A2P12110 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A2P12110 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.68■□□□□ 0.1
COL6A2P12110 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A2P12110 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A2P12110 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.68■□□□□ 0.1
COL6A2P12110 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
COL6A2P12110 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
COL6A2P12110 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
COL6A2P12110 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A2P12110 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.67■□□□□ 0.1
COL6A2P12110 CICP14-201ENST00000629111 2732 ntBASIC15.67■□□□□ 0.1
COL6A2P12110 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.67■□□□□ 0.1
COL6A2P12110 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
COL6A2P12110 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.67■□□□□ 0.1
COL6A2P12110 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
COL6A2P12110 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
COL6A2P12110 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
COL6A2P12110 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.67■□□□□ 0.1
COL6A2P12110 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.67■□□□□ 0.1
COL6A2P12110 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.67■□□□□ 0.1
COL6A2P12110 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 AC106730.1-201ENST00000566722 1090 ntBASIC15.67■□□□□ 0.1
COL6A2P12110 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.67■□□□□ 0.1
COL6A2P12110 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.67■□□□□ 0.1
COL6A2P12110 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.67■□□□□ 0.1
COL6A2P12110 AC092902.6-201ENST00000641783 218 ntBASIC15.67■□□□□ 0.1
COL6A2P12110 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
COL6A2P12110 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.67■□□□□ 0.1
COL6A2P12110 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
COL6A2P12110 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
COL6A2P12110 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.67■□□□□ 0.1
COL6A2P12110 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A2P12110 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
COL6A2P12110 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A2P12110 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.66■□□□□ 0.1
COL6A2P12110 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A2P12110 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A2P12110 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A2P12110 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A2P12110 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A2P12110 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A2P12110 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A2P12110 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A2P12110 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A2P12110 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A2P12110 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.66■□□□□ 0.1
COL6A2P12110 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A2P12110 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A2P12110 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
COL6A2P12110 AL590627.1-203ENST00000421194 1026 ntBASIC15.66■□□□□ 0.1
COL6A2P12110 MED15P5-201ENST00000423150 992 ntBASIC15.66■□□□□ 0.1
COL6A2P12110 SPDYE11-202ENST00000450699 704 ntBASIC15.66■□□□□ 0.1
COL6A2P12110 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.66■□□□□ 0.1
COL6A2P12110 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A2P12110 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.66■□□□□ 0.1
COL6A2P12110 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A2P12110 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.66■□□□□ 0.1
COL6A2P12110 SPDYE9P-201ENST00000570642 692 ntBASIC15.66■□□□□ 0.1
COL6A2P12110 AC097359.3-201ENST00000603982 1210 ntBASIC15.66■□□□□ 0.1
COL6A2P12110 AC140113.2-201ENST00000604370 208 ntBASIC15.66■□□□□ 0.1
COL6A2P12110 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.66■□□□□ 0.1
COL6A2P12110 AC026120.1-201ENST00000611536 926 ntBASIC15.66■□□□□ 0.1
COL6A2P12110 SPDYE10P-202ENST00000612005 668 ntBASIC15.66■□□□□ 0.1
COL6A2P12110 SPDYE8P-202ENST00000612377 668 ntBASIC15.66■□□□□ 0.1
COL6A2P12110 BX640515.1-201ENST00000617215 977 ntBASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms