Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 NAA60-213ENST00000572169 582 ntTSL 27.01□□□□□ -1.296e-6■■■■■ 103.4
SF3B1O75533 PPP2R3C-205ENST00000554265 1029 ntTSL 26.91□□□□□ -1.36e-6■■■■■ 103.4
SF3B1O75533 CHSY1-204ENST00000560766 553 ntTSL 46.89□□□□□ -1.316e-6■■■■■ 103.4
SF3B1O75533 FAM91A1-205ENST00000519721 4650 ntTSL 1 (best)6.85□□□□□ -1.311e-8■■■■■ 103.4
SF3B1O75533 FBXL2-219ENST00000497411 625 ntTSL 56.81□□□□□ -1.326e-6■■■■■ 103.4
SF3B1O75533 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.326e-6■■■■■ 103.4
SF3B1O75533 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.326e-6■■■■■ 103.4
SF3B1O75533 NTAN1-209ENST00000568738 439 ntTSL 26.76□□□□□ -1.336e-6■■■■■ 103.4
SF3B1O75533 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.336e-6■■■■■ 103.4
SF3B1O75533 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.336e-6■■■■■ 103.4
SF3B1O75533 REXO5-209ENST00000565340 720 ntTSL 56.68□□□□□ -1.341e-8■■■■■ 103.4
SF3B1O75533 INTS3-205ENST00000476843 3404 ntTSL 1 (best)6.67□□□□□ -1.342e-6■■■■■ 103.4
SF3B1O75533 COA1-216ENST00000470156 569 ntTSL 1 (best)6.66□□□□□ -1.341e-8■■■■■ 103.4
SF3B1O75533 ZNF519-213ENST00000624133 6497 nt6.58□□□□□ -1.361e-8■■■■■ 103.4
SF3B1O75533 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.372e-12■■■■■ 103.4
SF3B1O75533 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC6.51□□□□□ -1.376e-6■■■■■ 103.4
SF3B1O75533 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC6.49□□□□□ -1.379e-9■■■■■ 103.4
SF3B1O75533 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.45□□□□□ -1.381e-8■■■■■ 103.4
SF3B1O75533 FAM49B-218ENST00000520887 640 ntTSL 26.41□□□□□ -1.386e-6■■■■■ 103.4
SF3B1O75533 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.386e-6■■■■■ 103.4
SF3B1O75533 BTF3-209ENST00000514505 740 ntTSL 56.4□□□□□ -1.392e-6■■■■■ 103.4
SF3B1O75533 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.396e-6■■■■■ 103.4
SF3B1O75533 BTF3-208ENST00000514360 1177 ntTSL 26.34□□□□□ -1.392e-6■■■■■ 103.4
SF3B1O75533 EFCAB2-215ENST00000549220 557 ntTSL 46.33□□□□□ -1.46e-6■■■■■ 103.4
SF3B1O75533 ATP6V1D-211ENST00000555625 784 ntTSL 56.33□□□□□ -1.46e-6■■■■■ 103.4
SF3B1O75533 ARMC8-212ENST00000470549 652 ntTSL 36.33□□□□□ -1.46e-6■■■■■ 103.4
SF3B1O75533 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC6.31□□□□□ -1.46e-6■■■■■ 103.4
SF3B1O75533 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.413e-6■■■■■ 103.4
SF3B1O75533 TACC1-227ENST00000523834 589 ntTSL 46.19□□□□□ -1.421e-8■■■■■ 103.4
SF3B1O75533 CPNE3-208ENST00000614678 4201 ntTSL 1 (best)6.18□□□□□ -1.426e-6■■■■■ 103.4
SF3B1O75533 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.426e-6■■■■■ 103.4
SF3B1O75533 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.436e-6■■■■■ 103.4
SF3B1O75533 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC6.1□□□□□ -1.431e-8■■■■■ 103.4
SF3B1O75533 FAM91A1-203ENST00000518333 570 ntTSL 26.09□□□□□ -1.431e-8■■■■■ 103.4
SF3B1O75533 SEC14L1-228ENST00000591786 548 ntTSL 46.06□□□□□ -1.446e-6■■■■■ 103.4
SF3B1O75533 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.446e-6■■■■■ 103.4
SF3B1O75533 GTF2H3-202ENST00000536375 790 ntTSL 55.9□□□□□ -1.471e-8■■■■■ 103.4
SF3B1O75533 PTPRC-210ENST00000462363 926 ntTSL 1 (best)5.89□□□□□ -1.471e-8■■■■■ 103.4
SF3B1O75533 CLASP2-222ENST00000494261 764 ntTSL 45.87□□□□□ -1.471e-10■■■■■ 103.4
SF3B1O75533 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.471e-8■■■■■ 103.4
SF3B1O75533 FTX-205ENST00000455395 654 ntTSL 35.82□□□□□ -1.481e-8■■■■■ 103.4
SF3B1O75533 ZNF519-210ENST00000592049 558 ntTSL 55.81□□□□□ -1.481e-8■■■■■ 103.4
SF3B1O75533 MPDU1-224ENST00000584378 475 ntTSL 45.78□□□□□ -1.481e-8■■■■■ 103.4
SF3B1O75533 UTP6-205ENST00000490218 807 ntTSL 55.76□□□□□ -1.491e-8■■■■■ 103.4
SF3B1O75533 HNRNPLL-201ENST00000272249 2190 ntTSL 25.67□□□□□ -1.52e-12■■■■■ 103.4
SF3B1O75533 BBOX1-AS1-201ENST00000525302 583 ntTSL 45.62□□□□□ -1.515e-6■■■■■ 103.4
SF3B1O75533 BTF3-203ENST00000507081 377 ntTSL 55.62□□□□□ -1.512e-6■■■■■ 103.4
SF3B1O75533 FAM91A1-204ENST00000518976 626 ntTSL 35.6□□□□□ -1.511e-8■■■■■ 103.4
SF3B1O75533 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.57□□□□□ -1.526e-6■■■■■ 103.4
SF3B1O75533 COG2-208ENST00000494371 7836 ntTSL 25.53□□□□□ -1.526e-6■■■■■ 103.4
SF3B1O75533 QKI-217ENST00000545607 846 ntTSL 55.52□□□□□ -1.535e-6■■■■■ 103.4
SF3B1O75533 ARHGEF3-209ENST00000477833 757 ntTSL 35.51□□□□□ -1.531e-8■■■■■ 103.4
SF3B1O75533 MPDU1-213ENST00000575256 392 ntTSL 35.49□□□□□ -1.531e-8■■■■■ 103.4
SF3B1O75533 ZNF519-212ENST00000592411 585 ntTSL 55.48□□□□□ -1.531e-8■■■■■ 103.4
SF3B1O75533 ARHGEF3-205ENST00000468466 514 ntTSL 45.47□□□□□ -1.531e-8■■■■■ 103.4
SF3B1O75533 FBXL2-215ENST00000483037 558 ntTSL 45.44□□□□□ -1.546e-6■■■■■ 103.4
SF3B1O75533 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.43□□□□□ -1.546e-6■■■■■ 103.4
SF3B1O75533 FTX-208ENST00000602776 561 ntTSL 45.42□□□□□ -1.541e-8■■■■■ 103.4
SF3B1O75533 EFCAB2-205ENST00000425550 550 ntTSL 35.41□□□□□ -1.546e-6■■■■■ 103.4
SF3B1O75533 COA1-207ENST00000420441 547 ntTSL 25.3□□□□□ -1.561e-8■■■■■ 103.4
SF3B1O75533 ACOT9-206ENST00000473710 793 ntTSL 35.28□□□□□ -1.566e-6■■■■■ 103.4
SF3B1O75533 BTF3-204ENST00000508901 954 ntTSL 25.25□□□□□ -1.572e-6■■■■■ 103.4
SF3B1O75533 UBA5-207ENST00000469158 584 ntTSL 35.24□□□□□ -1.571e-8■■■■■ 103.4
SF3B1O75533 SSBP3-213ENST00000530618 524 ntTSL 45.14□□□□□ -1.596e-6■■■■■ 103.4
SF3B1O75533 BDP1-203ENST00000508157 3403 ntTSL 55.09□□□□□ -1.596e-6■■■■■ 103.4
SF3B1O75533 ZNF519-205ENST00000589203 7112 ntTSL 1 (best)5.09□□□□□ -1.591e-8■■■■■ 103.4
SF3B1O75533 AMFR-212ENST00000568762 424 ntTSL 35.08□□□□□ -1.66e-6■■■■■ 103.4
SF3B1O75533 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.08□□□□□ -1.61e-8■■■■■ 103.4
SF3B1O75533 IFT20-205ENST00000578009 611 ntTSL 34.99□□□□□ -1.616e-6■■■■■ 103.4
SF3B1O75533 FAM126B-204ENST00000452799 692 ntTSL 34.99□□□□□ -1.616e-6■■■■■ 103.4
SF3B1O75533 PPP3CA-209ENST00000529324 579 ntTSL 34.93□□□□□ -1.626e-6■■■■■ 103.4
SF3B1O75533 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.91□□□□□ -1.623e-6■■■■■ 103.4
SF3B1O75533 ATXN10-210ENST00000493643 617 ntTSL 54.9□□□□□ -1.636e-6■■■■■ 103.4
SF3B1O75533 ATXN10-205ENST00000451241 514 ntTSL 34.9□□□□□ -1.636e-6■■■■■ 103.4
SF3B1O75533 EFCAB2-212ENST00000495271 744 ntTSL 54.9□□□□□ -1.636e-6■■■■■ 103.4
SF3B1O75533 CAMSAP1-205ENST00000468150 284 ntTSL 54.85□□□□□ -1.636e-6■■■■■ 103.4
SF3B1O75533 RRM1-213ENST00000533495 2381 ntTSL 24.85□□□□□ -1.636e-6■■■■■ 103.4
SF3B1O75533 REV1-207ENST00000465835 3172 ntTSL 54.78□□□□□ -1.644e-6■■■■■ 103.4
SF3B1O75533 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.656e-6■■■■■ 103.4
SF3B1O75533 AC000123.3-201ENST00000624029 4975 ntBASIC4.7□□□□□ -1.666e-6■■■■■ 103.4
SF3B1O75533 CEP85L-207ENST00000462101 483 ntTSL 24.64□□□□□ -1.671e-8■■■■■ 103.4
SF3B1O75533 SUCLG1-209ENST00000491642 717 ntTSL 34.62□□□□□ -1.676e-6■■■■■ 103.4
SF3B1O75533 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.681e-8■■■■■ 103.4
SF3B1O75533 CTNNB1-215ENST00000488914 804 ntTSL 24.53□□□□□ -1.686e-6■■■■■ 103.4
SF3B1O75533 SPDYA-205ENST00000462832 2081 ntTSL 24.52□□□□□ -1.696e-6■■■■■ 103.4
SF3B1O75533 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.716e-6■■■■■ 103.4
SF3B1O75533 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.726e-6■■■■■ 103.4
SF3B1O75533 ADAMTS6-207ENST00000502886 1237 ntTSL 54.2□□□□□ -1.741e-8■■■■■ 103.4
SF3B1O75533 EXT2-211ENST00000534048 520 ntTSL 34.13□□□□□ -1.756e-6■■■■■ 103.4
SF3B1O75533 RWDD4P2-201ENST00000426392 563 ntBASIC4.11□□□□□ -1.756e-6■■■■■ 103.4
SF3B1O75533 AL390879.2-203ENST00000426943 1121 ntBASIC4.1□□□□□ -1.751e-8■■■■■ 103.4
SF3B1O75533 ARV1-205ENST00000459891 1009 ntTSL 54.05□□□□□ -1.761e-8■■■■■ 103.4
SF3B1O75533 WNK4-203ENST00000587745 188 ntTSL 54.03□□□□□ -1.766e-6■■■■■ 103.4
SF3B1O75533 SHPRH-205ENST00000433355 11660 ntTSL 1 (best)4.02□□□□□ -1.776e-6■■■■■ 103.4
SF3B1O75533 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC3.97□□□□□ -1.776e-6■■■■■ 103.4
SF3B1O75533 DDHD1-205ENST00000555400 2722 ntTSL 23.95□□□□□ -1.786e-6■■■■■ 103.4
SF3B1O75533 ARMC8-216ENST00000471709 691 ntTSL 33.95□□□□□ -1.786e-6■■■■■ 103.4
SF3B1O75533 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.92□□□□□ -1.786e-6■■■■■ 103.4
SF3B1O75533 BBOX1-AS1-202ENST00000526061 471 ntTSL 43.92□□□□□ -1.785e-6■■■■■ 103.4
SF3B1O75533 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.9□□□□□ -1.795e-6■■■■■ 103.4
Retrieved 100 of 46,956 protein–RNA pairs in 2298.3 ms