Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 AL450472.2-201ENST00000603663 1156 ntBASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 AC103702.1-201ENST00000548801 2630 ntBASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 AC023157.3-201ENST00000619086 2088 ntBASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 AC144831.1-201ENST00000573312 2656 ntBASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HIF3AQ9Y2N7 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 PUS1-205ENST00000535067 838 ntTSL 3 BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 AC022145.2-201ENST00000598203 171 ntBASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 AL671883.3-201ENST00000603274 991 ntBASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 AC105339.1-204ENST00000636249 355 ntBASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.34□□□□□ -0.11
HIF3AQ9Y2N7 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HIF3AQ9Y2N7 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.11
HIF3AQ9Y2N7 AL109954.1-202ENST00000564051 2148 ntBASIC14.33□□□□□ -0.11
HIF3AQ9Y2N7 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
HIF3AQ9Y2N7 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
HIF3AQ9Y2N7 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.33□□□□□ -0.11
HIF3AQ9Y2N7 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.33□□□□□ -0.11
HIF3AQ9Y2N7 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HIF3AQ9Y2N7 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HIF3AQ9Y2N7 AC006486.2-201ENST00000624246 2199 ntBASIC14.33□□□□□ -0.11
HIF3AQ9Y2N7 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 CD82-202ENST00000342935 967 ntTSL 5 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 PHKG1P2-201ENST00000457537 863 ntBASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms