Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 FO393414.2-201ENST00000405153 598 ntBASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 AC121493.1-201ENST00000602316 450 ntBASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 AC003101.2-201ENST00000612557 442 ntBASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 AP001059.3-201ENST00000619053 235 ntBASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 RPS6P14-201ENST00000425165 719 ntBASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 CNN2P11-201ENST00000429351 262 ntBASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 GPS2P2-201ENST00000430745 888 ntBASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 ZNF736P11Y-201ENST00000442535 1213 ntBASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 SPDYE14P-201ENST00000442619 822 ntBASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 ZNF736P12Y-201ENST00000443152 1243 ntBASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 ZNF736P4Y-201ENST00000454995 1243 ntBASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 AC026150.2-201ENST00000564693 1156 ntBASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 GAPDHP74-202ENST00000632456 782 ntBASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS9D1Q9Y2B5 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS9D1Q9Y2B5 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS9D1Q9Y2B5 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS9D1Q9Y2B5 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
VPS9D1Q9Y2B5 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS9D1Q9Y2B5 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS9D1Q9Y2B5 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS9D1Q9Y2B5 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
VPS9D1Q9Y2B5 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
VPS9D1Q9Y2B5 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
VPS9D1Q9Y2B5 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS9D1Q9Y2B5 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS9D1Q9Y2B5 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS9D1Q9Y2B5 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
VPS9D1Q9Y2B5 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms