Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 PARN-202ENST00000420015 2360 ntTSL 2 BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 CEND1P1-201ENST00000451006 455 ntBASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 ALG1L8P-201ENST00000533887 760 ntBASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 AC005829.1-201ENST00000570002 483 ntBASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 AL607033.1-201ENST00000623900 1599 ntBASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 POLL-217ENST00000628479 1953 ntTSL 5 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMCH1Q9UPQ0 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 TPO-203ENST00000346956 2923 ntTSL 5 BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 FAM58DP-201ENST00000428076 619 ntBASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 AC005237.2-201ENST00000434368 219 ntBASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 SUOX-214ENST00000551841 906 ntTSL 3 BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 BANF1P1-201ENST00000553684 263 ntBASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMCH1Q9UPQ0 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC18.64■□□□□ 0.58
LIMCH1Q9UPQ0 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
LIMCH1Q9UPQ0 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms