Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 AC004987.2-201ENST00000395959 1148 ntBASIC16.4■□□□□ 0.22
PCDH9Q9HC56 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 RARRES2P9-201ENST00000565168 469 ntBASIC16.4■□□□□ 0.22
PCDH9Q9HC56 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 C18orf15-201ENST00000623680 2534 ntBASIC16.4■□□□□ 0.22
PCDH9Q9HC56 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH9Q9HC56 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
PCDH9Q9HC56 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
PCDH9Q9HC56 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
PCDH9Q9HC56 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
PCDH9Q9HC56 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH9Q9HC56 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 AC026150.2-201ENST00000564693 1156 ntBASIC16.38■□□□□ 0.21
PCDH9Q9HC56 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.38■□□□□ 0.21
PCDH9Q9HC56 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
PCDH9Q9HC56 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms