Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.78■□□□□ 0.28
PAAF1Q9BRP4 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 AL139384.1-201ENST00000612143 3047 ntBASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 HLA-V-201ENST00000429037 534 ntBASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 BNIP3P42-201ENST00000454982 569 ntBASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 AC015910.1-201ENST00000579400 975 ntBASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 BNIP3P29-201ENST00000598302 571 ntBASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 AC107373.2-201ENST00000607735 490 ntBASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 RPS24-214ENST00000613865 538 ntTSL 5 BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 AC011447.5-201ENST00000616168 564 ntBASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.77■□□□□ 0.28
PAAF1Q9BRP4 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
PAAF1Q9BRP4 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PAAF1Q9BRP4 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.77■□□□□ 0.27
PAAF1Q9BRP4 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.27
PAAF1Q9BRP4 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.77■□□□□ 0.27
PAAF1Q9BRP4 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PAAF1Q9BRP4 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PAAF1Q9BRP4 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.77■□□□□ 0.27
PAAF1Q9BRP4 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PAAF1Q9BRP4 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.77■□□□□ 0.27
PAAF1Q9BRP4 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.77■□□□□ 0.27
PAAF1Q9BRP4 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PAAF1Q9BRP4 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PAAF1Q9BRP4 CYP2T1P-202ENST00000641596 2535 ntBASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 AC093525.8-201ENST00000624099 1342 ntBASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 AL133267.1-201ENST00000398220 340 ntBASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 CTBP2P5-201ENST00000454986 1264 ntBASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 AC093433.1-201ENST00000458048 571 ntBASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 AC104989.1-201ENST00000519711 778 ntBASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 PTP4A1P2-201ENST00000546033 454 ntBASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 AP005482.1-201ENST00000563722 1273 ntBASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 OR6D1P-203ENST00000641209 4860 ntBASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PAAF1Q9BRP4 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms