Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 AC092364.2-201ENST00000596710 2692 ntBASIC15.39■□□□□ 0.05
LMX1AQ8TE12 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
LMX1AQ8TE12 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 AL121723.1-201ENST00000445194 1519 ntBASIC15.38■□□□□ 0.05
LMX1AQ8TE12 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 ANKRD19P-201ENST00000338192 862 ntBASIC15.38■□□□□ 0.05
LMX1AQ8TE12 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 KRT18P43-201ENST00000469825 1281 ntBASIC15.38■□□□□ 0.05
LMX1AQ8TE12 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LMX1AQ8TE12 PDIA3P1-201ENST00000471856 1510 ntBASIC15.38■□□□□ 0.05
LMX1AQ8TE12 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.37■□□□□ 0.05
LMX1AQ8TE12 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 KLF2P4-201ENST00000451959 1225 ntBASIC15.37■□□□□ 0.05
LMX1AQ8TE12 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 CTBP2P5-201ENST00000454986 1264 ntBASIC15.37■□□□□ 0.05
LMX1AQ8TE12 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 AC068587.3-201ENST00000526613 355 ntBASIC15.37■□□□□ 0.05
LMX1AQ8TE12 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms