Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 NKG7-205ENST00000600427 520 ntTSL 3 BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 GOLGA2P9-201ENST00000596977 1937 ntBASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC54Q8NEL0 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 KRT18P2-201ENST00000447938 1258 ntBASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 AC099522.2-201ENST00000607001 744 ntBASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 AC026979.3-201ENST00000607315 403 ntBASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 AC027601.4-201ENST00000611259 610 ntBASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 FAM197Y3-203ENST00000618346 717 ntBASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 WARS-232ENST00000556645 2508 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC54Q8NEL0 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 SSR4P1-203ENST00000599569 2260 ntBASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 RAC2-202ENST00000401529 569 ntTSL 4 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms