Protein–RNA interactions for Protein: Q8N196

SIX5, Homeobox protein SIX5, humanhuman

Predictions only

Length 739 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX5Q8N196 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SIX5Q8N196 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
SIX5Q8N196 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.24■□□□□ 0.19
SIX5Q8N196 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX5Q8N196 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.24■□□□□ 0.19
SIX5Q8N196 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.24■□□□□ 0.19
SIX5Q8N196 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
SIX5Q8N196 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX5Q8N196 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SIX5Q8N196 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SIX5Q8N196 SERPINA7P1-201ENST00000443077 631 ntBASIC16.24■□□□□ 0.19
SIX5Q8N196 AC104306.2-201ENST00000451877 341 ntBASIC16.24■□□□□ 0.19
SIX5Q8N196 ARTN-209ENST00000479128 471 ntTSL 3 BASIC16.24■□□□□ 0.19
SIX5Q8N196 LINC01551-203ENST00000550266 455 ntTSL 3 BASIC16.24■□□□□ 0.19
SIX5Q8N196 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC16.24■□□□□ 0.19
SIX5Q8N196 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SIX5Q8N196 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX5Q8N196 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SIX5Q8N196 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
SIX5Q8N196 METTL26-214ENST00000614890 801 ntTSL 3 BASIC16.24■□□□□ 0.19
SIX5Q8N196 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC16.24■□□□□ 0.19
SIX5Q8N196 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX5Q8N196 AC134043.2-201ENST00000624206 2238 ntBASIC16.24■□□□□ 0.19
SIX5Q8N196 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX5Q8N196 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX5Q8N196 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX5Q8N196 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX5Q8N196 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SIX5Q8N196 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.24■□□□□ 0.19
SIX5Q8N196 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
SIX5Q8N196 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SIX5Q8N196 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SIX5Q8N196 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX5Q8N196 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
SIX5Q8N196 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
SIX5Q8N196 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
SIX5Q8N196 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX5Q8N196 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.24■□□□□ 0.19
SIX5Q8N196 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.24■□□□□ 0.19
SIX5Q8N196 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX5Q8N196 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SIX5Q8N196 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
SIX5Q8N196 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 PCGF3-213ENST00000620529 1899 ntBASIC16.23■□□□□ 0.19
SIX5Q8N196 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.23■□□□□ 0.19
SIX5Q8N196 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
SIX5Q8N196 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
SIX5Q8N196 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 C2orf27AP3-201ENST00000434123 579 ntBASIC16.23■□□□□ 0.19
SIX5Q8N196 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC16.23■□□□□ 0.19
SIX5Q8N196 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
SIX5Q8N196 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 AC093433.1-201ENST00000458048 571 ntBASIC16.23■□□□□ 0.19
SIX5Q8N196 VDAC1P7-201ENST00000462417 847 ntBASIC16.23■□□□□ 0.19
SIX5Q8N196 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC16.23■□□□□ 0.19
SIX5Q8N196 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
SIX5Q8N196 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.23■□□□□ 0.19
SIX5Q8N196 AP001063.1-201ENST00000568332 529 ntBASIC16.23■□□□□ 0.19
SIX5Q8N196 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.23■□□□□ 0.19
SIX5Q8N196 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC16.23■□□□□ 0.19
SIX5Q8N196 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
SIX5Q8N196 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
SIX5Q8N196 AL354718.3-201ENST00000616414 581 ntBASIC16.23■□□□□ 0.19
SIX5Q8N196 CR382287.1-201ENST00000623954 586 ntBASIC16.23■□□□□ 0.19
SIX5Q8N196 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
SIX5Q8N196 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.23■□□□□ 0.19
SIX5Q8N196 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
SIX5Q8N196 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
SIX5Q8N196 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.23■□□□□ 0.19
SIX5Q8N196 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
SIX5Q8N196 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SIX5Q8N196 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.22■□□□□ 0.19
SIX5Q8N196 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SIX5Q8N196 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX5Q8N196 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX5Q8N196 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SIX5Q8N196 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX5Q8N196 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX5Q8N196 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
SIX5Q8N196 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SIX5Q8N196 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SIX5Q8N196 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX5Q8N196 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SIX5Q8N196 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms