Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NUP54Q7Z3B4 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 PHKG1P2-201ENST00000457537 863 ntBASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 SPIB-207ENST00000597855 564 ntTSL 4 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
NUP54Q7Z3B4 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 TSSK5P-201ENST00000423978 907 ntBASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms