Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
TFF3Q07654 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
TFF3Q07654 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
TFF3Q07654 AC092171.3-201ENST00000610122 2651 ntBASIC13.92□□□□□ -0.18
TFF3Q07654 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
TFF3Q07654 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
TFF3Q07654 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
TFF3Q07654 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
TFF3Q07654 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
TFF3Q07654 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC13.91□□□□□ -0.18
TFF3Q07654 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
TFF3Q07654 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TFF3Q07654 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TFF3Q07654 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
TFF3Q07654 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
TFF3Q07654 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC13.91□□□□□ -0.18
TFF3Q07654 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TFF3Q07654 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC13.91□□□□□ -0.18
TFF3Q07654 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC13.91□□□□□ -0.18
TFF3Q07654 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
TFF3Q07654 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC13.91□□□□□ -0.18
TFF3Q07654 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC13.91□□□□□ -0.18
TFF3Q07654 GRN-214ENST00000589265 1632 ntTSL 5 BASIC13.91□□□□□ -0.18
TFF3Q07654 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC13.91□□□□□ -0.18
TFF3Q07654 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TFF3Q07654 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
TFF3Q07654 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
TFF3Q07654 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TFF3Q07654 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TFF3Q07654 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TFF3Q07654 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TFF3Q07654 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC13.91□□□□□ -0.18
TFF3Q07654 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.91□□□□□ -0.18
TFF3Q07654 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC13.91□□□□□ -0.18
TFF3Q07654 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC13.91□□□□□ -0.18
TFF3Q07654 AC243562.2-201ENST00000561247 970 ntBASIC13.91□□□□□ -0.18
TFF3Q07654 AC124283.3-201ENST00000570869 594 ntBASIC13.91□□□□□ -0.18
TFF3Q07654 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC13.91□□□□□ -0.18
TFF3Q07654 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC13.91□□□□□ -0.18
TFF3Q07654 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC13.91□□□□□ -0.18
TFF3Q07654 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC13.91□□□□□ -0.18
TFF3Q07654 GPR182-203ENST00000622922 591 ntBASIC13.91□□□□□ -0.18
TFF3Q07654 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC13.91□□□□□ -0.18
TFF3Q07654 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
TFF3Q07654 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC13.91□□□□□ -0.18
TFF3Q07654 KRT8P44-201ENST00000441609 1350 ntBASIC13.91□□□□□ -0.18
TFF3Q07654 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC13.91□□□□□ -0.18
TFF3Q07654 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TFF3Q07654 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
TFF3Q07654 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
TFF3Q07654 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TFF3Q07654 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
TFF3Q07654 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TFF3Q07654 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC13.91□□□□□ -0.18
TFF3Q07654 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
TFF3Q07654 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
TFF3Q07654 PCDHA1-201ENST00000378133 2726 ntBASIC13.91□□□□□ -0.18
TFF3Q07654 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC13.91□□□□□ -0.18
TFF3Q07654 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
TFF3Q07654 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TFF3Q07654 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.18
TFF3Q07654 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC13.9□□□□□ -0.18
TFF3Q07654 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
TFF3Q07654 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TFF3Q07654 AC011270.2-201ENST00000624293 2550 ntBASIC13.9□□□□□ -0.18
TFF3Q07654 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC13.9□□□□□ -0.18
TFF3Q07654 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
TFF3Q07654 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TFF3Q07654 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
TFF3Q07654 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC13.9□□□□□ -0.18
TFF3Q07654 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TFF3Q07654 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC13.9□□□□□ -0.18
TFF3Q07654 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TFF3Q07654 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TFF3Q07654 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC13.9□□□□□ -0.18
TFF3Q07654 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TFF3Q07654 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TFF3Q07654 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TFF3Q07654 TOMM22P5-201ENST00000416399 439 ntBASIC13.9□□□□□ -0.18
TFF3Q07654 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC13.9□□□□□ -0.18
TFF3Q07654 RPL7P3-201ENST00000441388 714 ntBASIC13.9□□□□□ -0.18
TFF3Q07654 BCRP2-202ENST00000447763 634 ntBASIC13.9□□□□□ -0.18
TFF3Q07654 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC13.9□□□□□ -0.18
TFF3Q07654 BCRP6-201ENST00000510112 632 ntBASIC13.9□□□□□ -0.18
TFF3Q07654 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC13.9□□□□□ -0.18
TFF3Q07654 BCRP7-201ENST00000511549 544 ntBASIC13.9□□□□□ -0.18
TFF3Q07654 AP001889.1-201ENST00000525414 633 ntBASIC13.9□□□□□ -0.18
TFF3Q07654 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TFF3Q07654 AP000812.2-201ENST00000538934 718 ntBASIC13.9□□□□□ -0.18
TFF3Q07654 RN7SL219P-201ENST00000582872 296 ntBASIC13.9□□□□□ -0.18
TFF3Q07654 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC13.9□□□□□ -0.18
TFF3Q07654 AC084346.2-201ENST00000607097 949 ntBASIC13.9□□□□□ -0.18
TFF3Q07654 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
TFF3Q07654 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TFF3Q07654 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC13.9□□□□□ -0.18
TFF3Q07654 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC13.9□□□□□ -0.18
TFF3Q07654 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC13.9□□□□□ -0.18
TFF3Q07654 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC13.9□□□□□ -0.18
TFF3Q07654 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
TFF3Q07654 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms