Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 BCAR1-209ENST00000546196 1340 ntBASIC12.23□□□□□ -0.45
HIST1H1AQ02539 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 DDT-204ENST00000404092 805 ntTSL 3 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 NMU-203ENST00000507338 658 ntTSL 3 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 AC079776.4-201ENST00000511039 504 ntBASIC12.23□□□□□ -0.45
HIST1H1AQ02539 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 IGHV3-22-201ENST00000520721 359 ntBASIC12.23□□□□□ -0.45
HIST1H1AQ02539 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 RPL28-209ENST00000560055 670 ntTSL 3 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 SLC25A6P4-201ENST00000586535 553 ntBASIC12.23□□□□□ -0.45
HIST1H1AQ02539 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 AC126335.2-201ENST00000623362 4637 ntBASIC12.23□□□□□ -0.45
HIST1H1AQ02539 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC12.23□□□□□ -0.45
HIST1H1AQ02539 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 AC104109.2-201ENST00000602919 1418 ntBASIC12.22□□□□□ -0.45
HIST1H1AQ02539 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 PPP1R26P4-201ENST00000619065 3527 ntBASIC12.22□□□□□ -0.45
HIST1H1AQ02539 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 AC023157.3-201ENST00000619086 2088 ntBASIC12.22□□□□□ -0.45
HIST1H1AQ02539 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 VMO1-203ENST00000416307 712 ntTSL 2 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 AC009078.2-202ENST00000463353 338 ntBASIC12.22□□□□□ -0.45
HIST1H1AQ02539 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 CD7-202ENST00000578509 925 ntTSL 3 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 AL009183.1-201ENST00000603760 355 ntBASIC12.22□□□□□ -0.45
HIST1H1AQ02539 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 AC007292.2-201ENST00000593524 1812 ntBASIC12.22□□□□□ -0.45
HIST1H1AQ02539 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HIST1H1AQ02539 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms