Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.18□□□□□ -0.14
H3F3AP84243 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.18□□□□□ -0.14
H3F3AP84243 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.18□□□□□ -0.14
H3F3AP84243 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.18□□□□□ -0.14
H3F3AP84243 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.18□□□□□ -0.14
H3F3AP84243 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.18□□□□□ -0.14
H3F3AP84243 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.18□□□□□ -0.14
H3F3AP84243 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.18□□□□□ -0.14
H3F3AP84243 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.18□□□□□ -0.14
H3F3AP84243 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.18□□□□□ -0.14
H3F3AP84243 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.18□□□□□ -0.14
H3F3AP84243 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.18□□□□□ -0.14
H3F3AP84243 TARDBPP1-201ENST00000442013 1203 ntBASIC14.18□□□□□ -0.14
H3F3AP84243 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.18□□□□□ -0.14
H3F3AP84243 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.18□□□□□ -0.14
H3F3AP84243 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.18□□□□□ -0.14
H3F3AP84243 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.18□□□□□ -0.14
H3F3AP84243 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.18□□□□□ -0.14
H3F3AP84243 IGHV3-42-201ENST00000520410 361 ntBASIC14.18□□□□□ -0.14
H3F3AP84243 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.18□□□□□ -0.14
H3F3AP84243 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.18□□□□□ -0.14
H3F3AP84243 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
H3F3AP84243 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.18□□□□□ -0.14
H3F3AP84243 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.18□□□□□ -0.14
H3F3AP84243 AL390754.1-201ENST00000619088 582 ntBASIC14.18□□□□□ -0.14
H3F3AP84243 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.18□□□□□ -0.14
H3F3AP84243 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
H3F3AP84243 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.18□□□□□ -0.14
H3F3AP84243 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
H3F3AP84243 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
H3F3AP84243 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.18□□□□□ -0.14
H3F3AP84243 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.18□□□□□ -0.14
H3F3AP84243 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.18□□□□□ -0.14
H3F3AP84243 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.18□□□□□ -0.14
H3F3AP84243 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.18□□□□□ -0.14
H3F3AP84243 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.18□□□□□ -0.14
H3F3AP84243 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.18□□□□□ -0.14
H3F3AP84243 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.17□□□□□ -0.14
H3F3AP84243 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
H3F3AP84243 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.17□□□□□ -0.14
H3F3AP84243 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.17□□□□□ -0.14
H3F3AP84243 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.17□□□□□ -0.14
H3F3AP84243 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.17□□□□□ -0.14
H3F3AP84243 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
H3F3AP84243 BASP1P1-201ENST00000430708 665 ntBASIC14.17□□□□□ -0.14
H3F3AP84243 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.17□□□□□ -0.14
H3F3AP84243 SDHAP3-202ENST00000515467 728 ntBASIC14.17□□□□□ -0.14
H3F3AP84243 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.17□□□□□ -0.14
H3F3AP84243 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.17□□□□□ -0.14
H3F3AP84243 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.17□□□□□ -0.14
H3F3AP84243 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.17□□□□□ -0.14
H3F3AP84243 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC14.17□□□□□ -0.14
H3F3AP84243 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.17□□□□□ -0.14
H3F3AP84243 AC009407.1-201ENST00000568958 598 ntBASIC14.17□□□□□ -0.14
H3F3AP84243 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.17□□□□□ -0.14
H3F3AP84243 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.17□□□□□ -0.14
H3F3AP84243 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
H3F3AP84243 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
H3F3AP84243 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC14.17□□□□□ -0.14
H3F3AP84243 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.17□□□□□ -0.14
H3F3AP84243 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC14.17□□□□□ -0.14
H3F3AP84243 BTBD7P1-201ENST00000447253 1453 ntBASIC14.17□□□□□ -0.14
H3F3AP84243 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 AL607033.1-201ENST00000623900 1599 ntBASIC14.17□□□□□ -0.14
H3F3AP84243 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms