Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.46■□□□□ 0.07
YBX1P67809 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
YBX1P67809 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.46■□□□□ 0.07
YBX1P67809 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.46■□□□□ 0.07
YBX1P67809 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.46■□□□□ 0.07
YBX1P67809 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
YBX1P67809 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
YBX1P67809 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
YBX1P67809 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
YBX1P67809 AL080243.2-201ENST00000418783 582 ntBASIC15.46■□□□□ 0.07
YBX1P67809 AC055876.3-201ENST00000431496 288 ntBASIC15.46■□□□□ 0.07
YBX1P67809 AC027369.6-201ENST00000525520 931 ntBASIC15.46■□□□□ 0.07
YBX1P67809 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
YBX1P67809 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.46■□□□□ 0.07
YBX1P67809 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.46■□□□□ 0.07
YBX1P67809 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
YBX1P67809 LINC02084-201ENST00000606069 1096 ntBASIC15.46■□□□□ 0.07
YBX1P67809 AC138649.4-201ENST00000612222 287 ntBASIC15.46■□□□□ 0.07
YBX1P67809 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.46■□□□□ 0.07
YBX1P67809 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
YBX1P67809 AC006058.4-201ENST00000624016 1670 ntBASIC15.46■□□□□ 0.07
YBX1P67809 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
YBX1P67809 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
YBX1P67809 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.46■□□□□ 0.07
YBX1P67809 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
YBX1P67809 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
YBX1P67809 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
YBX1P67809 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
YBX1P67809 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
YBX1P67809 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
YBX1P67809 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
YBX1P67809 AL035456.1-201ENST00000456064 1369 ntBASIC15.46■□□□□ 0.07
YBX1P67809 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
YBX1P67809 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
YBX1P67809 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.46■□□□□ 0.07
YBX1P67809 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
YBX1P67809 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
YBX1P67809 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
YBX1P67809 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.06
YBX1P67809 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.06
YBX1P67809 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.46■□□□□ 0.06
YBX1P67809 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.46■□□□□ 0.06
YBX1P67809 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.06
YBX1P67809 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
YBX1P67809 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.45■□□□□ 0.06
YBX1P67809 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
YBX1P67809 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
YBX1P67809 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
YBX1P67809 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
YBX1P67809 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.45■□□□□ 0.06
YBX1P67809 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
YBX1P67809 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
YBX1P67809 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
YBX1P67809 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
YBX1P67809 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.45■□□□□ 0.06
YBX1P67809 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
YBX1P67809 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.45■□□□□ 0.06
YBX1P67809 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
YBX1P67809 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.45■□□□□ 0.06
YBX1P67809 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.45■□□□□ 0.06
YBX1P67809 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC15.45■□□□□ 0.06
YBX1P67809 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
YBX1P67809 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.45■□□□□ 0.06
YBX1P67809 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.45■□□□□ 0.06
YBX1P67809 HIST3H2BA-201ENST00000436555 524 ntBASIC15.45■□□□□ 0.06
YBX1P67809 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
YBX1P67809 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.45■□□□□ 0.06
YBX1P67809 AC067863.1-201ENST00000494933 530 ntBASIC15.45■□□□□ 0.06
YBX1P67809 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.45■□□□□ 0.06
YBX1P67809 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.45■□□□□ 0.06
YBX1P67809 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.45■□□□□ 0.06
YBX1P67809 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.45■□□□□ 0.06
YBX1P67809 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
YBX1P67809 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.45■□□□□ 0.06
YBX1P67809 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
YBX1P67809 AL390754.1-201ENST00000619088 582 ntBASIC15.45■□□□□ 0.06
YBX1P67809 AC106881.1-201ENST00000605849 3329 ntBASIC15.45■□□□□ 0.06
YBX1P67809 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
YBX1P67809 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
YBX1P67809 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
YBX1P67809 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.45■□□□□ 0.06
YBX1P67809 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
YBX1P67809 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
YBX1P67809 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.45■□□□□ 0.06
YBX1P67809 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
YBX1P67809 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
YBX1P67809 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.44■□□□□ 0.06
YBX1P67809 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
YBX1P67809 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
YBX1P67809 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
YBX1P67809 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.44■□□□□ 0.06
YBX1P67809 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
YBX1P67809 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
YBX1P67809 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
YBX1P67809 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
YBX1P67809 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.44■□□□□ 0.06
YBX1P67809 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
YBX1P67809 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
YBX1P67809 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.44■□□□□ 0.06
YBX1P67809 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms