Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC15.21■□□□□ 0.03
MSX2P35548 AC021097.1-201ENST00000607902 574 ntBASIC15.21■□□□□ 0.03
MSX2P35548 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
MSX2P35548 AC091076.1-201ENST00000610741 619 ntBASIC15.21■□□□□ 0.03
MSX2P35548 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC15.21■□□□□ 0.03
MSX2P35548 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.21■□□□□ 0.03
MSX2P35548 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.21■□□□□ 0.02
MSX2P35548 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
MSX2P35548 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
MSX2P35548 INTS4P1-203ENST00000641008 3683 ntBASIC15.21■□□□□ 0.02
MSX2P35548 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
MSX2P35548 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
MSX2P35548 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
MSX2P35548 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
MSX2P35548 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSX2P35548 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSX2P35548 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSX2P35548 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
MSX2P35548 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
MSX2P35548 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MSX2P35548 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.2■□□□□ 0.02
MSX2P35548 AC023024.2-201ENST00000623561 1993 ntBASIC15.2■□□□□ 0.02
MSX2P35548 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSX2P35548 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSX2P35548 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSX2P35548 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSX2P35548 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSX2P35548 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MSX2P35548 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSX2P35548 PTENP1-202ENST00000532280 3996 ntBASIC15.2■□□□□ 0.02
MSX2P35548 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSX2P35548 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.2■□□□□ 0.02
MSX2P35548 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC15.2■□□□□ 0.02
MSX2P35548 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
MSX2P35548 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC15.2■□□□□ 0.02
MSX2P35548 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
MSX2P35548 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
MSX2P35548 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSX2P35548 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC15.2■□□□□ 0.02
MSX2P35548 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MSX2P35548 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC15.2■□□□□ 0.02
MSX2P35548 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSX2P35548 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSX2P35548 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
MSX2P35548 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
MSX2P35548 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MSX2P35548 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MSX2P35548 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
MSX2P35548 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.19■□□□□ 0.02
MSX2P35548 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.19■□□□□ 0.02
MSX2P35548 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.19■□□□□ 0.02
MSX2P35548 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
MSX2P35548 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.19■□□□□ 0.02
MSX2P35548 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.19■□□□□ 0.02
MSX2P35548 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.19■□□□□ 0.02
MSX2P35548 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.19■□□□□ 0.02
MSX2P35548 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 AC021087.4-201ENST00000563761 564 ntBASIC15.19■□□□□ 0.02
MSX2P35548 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC15.19■□□□□ 0.02
MSX2P35548 MIR4515-201ENST00000584082 81 ntBASIC15.19■□□□□ 0.02
MSX2P35548 AC008608.2-201ENST00000606089 416 ntBASIC15.19■□□□□ 0.02
MSX2P35548 AL031055.1-201ENST00000606362 631 ntBASIC15.19■□□□□ 0.02
MSX2P35548 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC15.19■□□□□ 0.02
MSX2P35548 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC15.19■□□□□ 0.02
MSX2P35548 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
MSX2P35548 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC15.19■□□□□ 0.02
MSX2P35548 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 AC041040.2-201ENST00000622926 2899 ntBASIC15.19■□□□□ 0.02
MSX2P35548 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC15.19■□□□□ 0.02
MSX2P35548 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.19■□□□□ 0.02
MSX2P35548 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSX2P35548 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
MSX2P35548 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
MSX2P35548 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
MSX2P35548 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms