Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC9P31274 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC9P31274 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC20.73■□□□□ 0.91
HOXC9P31274 AC022188.1-201ENST00000620960 1664 ntBASIC20.73■□□□□ 0.91
HOXC9P31274 AHCYP2-201ENST00000430630 1300 ntBASIC20.73■□□□□ 0.91
HOXC9P31274 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC9P31274 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC9P31274 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC9P31274 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC20.73■□□□□ 0.91
HOXC9P31274 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC9P31274 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC9P31274 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC9P31274 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC9P31274 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC9P31274 AC148477.4-201ENST00000613430 1793 ntBASIC20.72■□□□□ 0.91
HOXC9P31274 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC9P31274 FOS-202ENST00000535987 1402 ntTSL 2 BASIC20.72■□□□□ 0.91
HOXC9P31274 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC9P31274 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC9P31274 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC9P31274 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
HOXC9P31274 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC9P31274 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC20.72■□□□□ 0.91
HOXC9P31274 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC20.72■□□□□ 0.91
HOXC9P31274 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC9P31274 RNA5SP486-201ENST00000515961 83 ntBASIC20.72■□□□□ 0.91
HOXC9P31274 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC20.72■□□□□ 0.91
HOXC9P31274 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC20.72■□□□□ 0.91
HOXC9P31274 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC20.72■□□□□ 0.91
HOXC9P31274 AL139099.5-201ENST00000635274 300 ntBASIC20.72■□□□□ 0.91
HOXC9P31274 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC9P31274 LINC02447-202ENST00000501888 2146 ntBASIC20.72■□□□□ 0.91
HOXC9P31274 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC9P31274 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC9P31274 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXC9P31274 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC20.72■□□□□ 0.91
HOXC9P31274 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC9P31274 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC9P31274 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC9P31274 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC9P31274 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
HOXC9P31274 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
HOXC9P31274 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC9P31274 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC9P31274 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC20.71■□□□□ 0.91
HOXC9P31274 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC9P31274 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC9P31274 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC20.71■□□□□ 0.91
HOXC9P31274 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
HOXC9P31274 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC9P31274 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC9P31274 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC9P31274 MIR1202-201ENST00000408529 83 ntBASIC20.71■□□□□ 0.91
HOXC9P31274 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC20.71■□□□□ 0.91
HOXC9P31274 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC9P31274 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC9P31274 AC245100.3-201ENST00000441281 285 ntBASIC20.71■□□□□ 0.91
HOXC9P31274 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC20.71■□□□□ 0.91
HOXC9P31274 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC20.71■□□□□ 0.91
HOXC9P31274 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
HOXC9P31274 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC9P31274 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC9P31274 MIR4741-201ENST00000579822 90 ntBASIC20.71■□□□□ 0.91
HOXC9P31274 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC20.71■□□□□ 0.91
HOXC9P31274 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC20.71■□□□□ 0.91
HOXC9P31274 KLK3-211ENST00000597483 810 ntTSL 2 BASIC20.71■□□□□ 0.91
HOXC9P31274 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC20.71■□□□□ 0.91
HOXC9P31274 AL118558.3-201ENST00000607414 1079 ntBASIC20.71■□□□□ 0.91
HOXC9P31274 PRKN-211ENST00000615065 261 ntTSL 5 BASIC20.71■□□□□ 0.91
HOXC9P31274 AC006453.4-201ENST00000636949 1252 ntBASIC20.71■□□□□ 0.91
HOXC9P31274 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC20.71■□□□□ 0.91
HOXC9P31274 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
HOXC9P31274 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
HOXC9P31274 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC9P31274 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HOXC9P31274 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC20.71■□□□□ 0.91
HOXC9P31274 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
HOXC9P31274 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC20.7■□□□□ 0.91
HOXC9P31274 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC9P31274 FRMD6-AS1-201ENST00000617151 2229 ntBASIC20.7■□□□□ 0.9
HOXC9P31274 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC20.7■□□□□ 0.9
HOXC9P31274 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC9P31274 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC9P31274 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC9P31274 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC9P31274 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC9P31274 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC9P31274 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC9P31274 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC9P31274 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC20.7■□□□□ 0.9
HOXC9P31274 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
HOXC9P31274 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC20.7■□□□□ 0.9
HOXC9P31274 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
HOXC9P31274 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC20.7■□□□□ 0.9
HOXC9P31274 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC20.7■□□□□ 0.9
HOXC9P31274 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC20.7■□□□□ 0.9
HOXC9P31274 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC9P31274 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC20.7■□□□□ 0.9
HOXC9P31274 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HOXC9P31274 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms