Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 AC211486.1-202ENST00000416371 468 ntBASIC12.15□□□□□ -0.46
HLA-DMBP28068 AC245100.5-201ENST00000452108 331 ntBASIC12.15□□□□□ -0.46
HLA-DMBP28068 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 AC211476.1-201ENST00000503899 468 ntBASIC12.15□□□□□ -0.46
HLA-DMBP28068 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 EHF-205ENST00000527935 557 ntTSL 2 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 AC099522.2-201ENST00000607001 744 ntBASIC12.15□□□□□ -0.46
HLA-DMBP28068 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 AC023157.3-201ENST00000619086 2088 ntBASIC12.15□□□□□ -0.46
HLA-DMBP28068 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
HLA-DMBP28068 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HLA-DMBP28068 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
HLA-DMBP28068 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.47
HLA-DMBP28068 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
HLA-DMBP28068 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC12.14□□□□□ -0.47
HLA-DMBP28068 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
HLA-DMBP28068 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
HLA-DMBP28068 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
HLA-DMBP28068 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC12.14□□□□□ -0.47
HLA-DMBP28068 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC12.14□□□□□ -0.47
HLA-DMBP28068 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC12.14□□□□□ -0.47
HLA-DMBP28068 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC12.14□□□□□ -0.47
HLA-DMBP28068 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC12.14□□□□□ -0.47
HLA-DMBP28068 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC12.14□□□□□ -0.47
HLA-DMBP28068 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC12.14□□□□□ -0.47
HLA-DMBP28068 PDPK2P-202ENST00000562415 1191 ntBASIC12.14□□□□□ -0.47
HLA-DMBP28068 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC12.14□□□□□ -0.47
HLA-DMBP28068 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC12.14□□□□□ -0.47
HLA-DMBP28068 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC12.14□□□□□ -0.47
HLA-DMBP28068 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 AL161645.1-201ENST00000622716 1255 ntBASIC12.14□□□□□ -0.47
HLA-DMBP28068 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
HLA-DMBP28068 AC134684.3-201ENST00000641758 218 ntBASIC12.14□□□□□ -0.47
HLA-DMBP28068 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC12.14□□□□□ -0.47
HLA-DMBP28068 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC12.14□□□□□ -0.47
HLA-DMBP28068 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC12.14□□□□□ -0.47
HLA-DMBP28068 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 TMBIM7P-203ENST00000641617 1718 ntBASIC12.14□□□□□ -0.47
HLA-DMBP28068 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
HLA-DMBP28068 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DMBP28068 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 BSG-215ENST00000618006 1329 ntTSL 2 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms