Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC16.02■□□□□ 0.16
VIMP08670 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VIMP08670 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VIMP08670 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VIMP08670 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VIMP08670 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.02■□□□□ 0.16
VIMP08670 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
VIMP08670 HCG4-201ENST00000418983 998 ntBASIC16.02■□□□□ 0.16
VIMP08670 CHCHD2P8-201ENST00000429873 447 ntBASIC16.02■□□□□ 0.16
VIMP08670 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.02■□□□□ 0.16
VIMP08670 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.02■□□□□ 0.16
VIMP08670 SLC25A6P2-201ENST00000497974 877 ntBASIC16.02■□□□□ 0.16
VIMP08670 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.02■□□□□ 0.16
VIMP08670 AC022616.7-201ENST00000525383 220 ntBASIC16.02■□□□□ 0.16
VIMP08670 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.02■□□□□ 0.16
VIMP08670 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.02■□□□□ 0.16
VIMP08670 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.02■□□□□ 0.16
VIMP08670 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VIMP08670 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.02■□□□□ 0.16
VIMP08670 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
VIMP08670 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
VIMP08670 NSUN5P1-202ENST00000421140 1535 ntBASIC16.02■□□□□ 0.15
VIMP08670 NSUN5P2-203ENST00000457352 1529 ntBASIC16.02■□□□□ 0.15
VIMP08670 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
VIMP08670 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VIMP08670 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC16.02■□□□□ 0.15
VIMP08670 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.02■□□□□ 0.15
VIMP08670 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.02■□□□□ 0.15
VIMP08670 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VIMP08670 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
VIMP08670 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
VIMP08670 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
VIMP08670 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
VIMP08670 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
VIMP08670 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.01■□□□□ 0.15
VIMP08670 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
VIMP08670 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
VIMP08670 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
VIMP08670 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.01■□□□□ 0.15
VIMP08670 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
VIMP08670 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
VIMP08670 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.01■□□□□ 0.15
VIMP08670 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.01■□□□□ 0.15
VIMP08670 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.01■□□□□ 0.15
VIMP08670 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.01■□□□□ 0.15
VIMP08670 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
VIMP08670 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.01■□□□□ 0.15
VIMP08670 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 INTS4P1-203ENST00000641008 3683 ntBASIC16.01■□□□□ 0.15
VIMP08670 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.01■□□□□ 0.15
VIMP08670 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 AMT-204ENST00000427987 1646 ntTSL 5 BASIC16.01■□□□□ 0.15
VIMP08670 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VIMP08670 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16■□□□□ 0.15
VIMP08670 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
VIMP08670 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16■□□□□ 0.15
VIMP08670 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16■□□□□ 0.15
VIMP08670 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16■□□□□ 0.15
VIMP08670 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
VIMP08670 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC16■□□□□ 0.15
VIMP08670 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC16■□□□□ 0.15
VIMP08670 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC16■□□□□ 0.15
VIMP08670 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC16■□□□□ 0.15
VIMP08670 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16■□□□□ 0.15
VIMP08670 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms