Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
AP3B1O00203 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP3B1O00203 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP3B1O00203 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP3B1O00203 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.05■□□□□ 0.16
AP3B1O00203 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
AP3B1O00203 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP3B1O00203 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
AP3B1O00203 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP3B1O00203 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP3B1O00203 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
AP3B1O00203 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.05■□□□□ 0.16
AP3B1O00203 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.05■□□□□ 0.16
AP3B1O00203 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
AP3B1O00203 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.05■□□□□ 0.16
AP3B1O00203 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.05■□□□□ 0.16
AP3B1O00203 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP3B1O00203 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP3B1O00203 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.05■□□□□ 0.16
AP3B1O00203 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.05■□□□□ 0.16
AP3B1O00203 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP3B1O00203 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
AP3B1O00203 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.05■□□□□ 0.16
AP3B1O00203 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.05■□□□□ 0.16
AP3B1O00203 AC004835.2-201ENST00000603762 682 ntBASIC16.05■□□□□ 0.16
AP3B1O00203 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP3B1O00203 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.05■□□□□ 0.16
AP3B1O00203 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
AP3B1O00203 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP3B1O00203 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
AP3B1O00203 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP3B1O00203 AL136379.1-201ENST00000623471 2642 ntBASIC16.05■□□□□ 0.16
AP3B1O00203 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
AP3B1O00203 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
AP3B1O00203 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.05■□□□□ 0.16
AP3B1O00203 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP3B1O00203 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.05■□□□□ 0.16
AP3B1O00203 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP3B1O00203 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP3B1O00203 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
AP3B1O00203 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
AP3B1O00203 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
AP3B1O00203 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
AP3B1O00203 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
AP3B1O00203 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
AP3B1O00203 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
AP3B1O00203 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.04■□□□□ 0.16
AP3B1O00203 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.04■□□□□ 0.16
AP3B1O00203 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.04■□□□□ 0.16
AP3B1O00203 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
AP3B1O00203 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
AP3B1O00203 AC018892.3-201ENST00000623986 2499 ntBASIC16.04■□□□□ 0.16
AP3B1O00203 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
AP3B1O00203 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 AC127383.1-201ENST00000444697 1800 ntBASIC16.04■□□□□ 0.16
AP3B1O00203 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.04■□□□□ 0.16
AP3B1O00203 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 SPDYE17-201ENST00000412399 783 ntBASIC16.04■□□□□ 0.16
AP3B1O00203 AL627223.1-201ENST00000416693 442 ntBASIC16.04■□□□□ 0.16
AP3B1O00203 AC136604.1-201ENST00000418535 575 ntBASIC16.04■□□□□ 0.16
AP3B1O00203 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.04■□□□□ 0.16
AP3B1O00203 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.04■□□□□ 0.16
AP3B1O00203 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.04■□□□□ 0.16
AP3B1O00203 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.04■□□□□ 0.16
AP3B1O00203 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.04■□□□□ 0.16
AP3B1O00203 AC105021.1-202ENST00000570572 669 ntBASIC16.04■□□□□ 0.16
AP3B1O00203 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.04■□□□□ 0.16
AP3B1O00203 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.04■□□□□ 0.16
AP3B1O00203 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
AP3B1O00203 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.04■□□□□ 0.16
AP3B1O00203 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC16.04■□□□□ 0.16
AP3B1O00203 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.04■□□□□ 0.16
AP3B1O00203 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
AP3B1O00203 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.04■□□□□ 0.16
AP3B1O00203 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
AP3B1O00203 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
AP3B1O00203 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms