Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ATG4BQ9Y4P1 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
ATG4BQ9Y4P1 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.03■□□□□ -0
ATG4BQ9Y4P1 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.03■□□□□ -0
ATG4BQ9Y4P1 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ATG4BQ9Y4P1 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ATG4BQ9Y4P1 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
ATG4BQ9Y4P1 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
ATG4BQ9Y4P1 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ATG4BQ9Y4P1 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.03■□□□□ -0
ATG4BQ9Y4P1 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.03■□□□□ -0
ATG4BQ9Y4P1 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 TREML5P-201ENST00000421694 576 ntBASIC15.02■□□□□ -0
ATG4BQ9Y4P1 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.02■□□□□ -0
ATG4BQ9Y4P1 TEX28P1-201ENST00000613479 1221 ntBASIC15.02■□□□□ -0
ATG4BQ9Y4P1 TEX28P2-201ENST00000617764 1221 ntBASIC15.02■□□□□ -0
ATG4BQ9Y4P1 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.02□□□□□ -0.01
ATG4BQ9Y4P1 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.02□□□□□ -0.01
ATG4BQ9Y4P1 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
ATG4BQ9Y4P1 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.02□□□□□ -0.01
ATG4BQ9Y4P1 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
ATG4BQ9Y4P1 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
ATG4BQ9Y4P1 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.02□□□□□ -0.01
ATG4BQ9Y4P1 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
ATG4BQ9Y4P1 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
ATG4BQ9Y4P1 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
ATG4BQ9Y4P1 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
ATG4BQ9Y4P1 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 MIR943-201ENST00000401286 94 ntBASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 AC136604.1-201ENST00000418535 575 ntBASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 AC092580.3-201ENST00000430932 139 ntBASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 AC097493.3-201ENST00000509725 367 ntBASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 AC027369.6-201ENST00000525520 931 ntBASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 AL033527.5-202ENST00000641632 1098 ntBASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 AL607033.1-201ENST00000623900 1599 ntBASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.01□□□□□ -0.01
ATG4BQ9Y4P1 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms