Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 AC092865.5-201ENST00000545435 363 ntBASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 KRT8P2-201ENST00000556193 944 ntBASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 AC005954.1-201ENST00000591962 337 ntTSL 3 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 AC007967.4-201ENST00000614700 386 ntBASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 AC022532.1-201ENST00000624563 1728 ntBASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 RAB5A-203ENST00000422242 1443 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS9D1Q9Y2B5 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 AC132872.4-202ENST00000622924 2756 ntBASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 YY1P1-201ENST00000427625 668 ntBASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 FAM58DP-201ENST00000428076 619 ntBASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 AP006288.1-201ENST00000446065 395 ntBASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 AC093520.2-201ENST00000561830 333 ntBASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 AC105021.1-202ENST00000570572 669 ntBASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 AC023511.2-201ENST00000618803 211 ntBASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 MST1L-201ENST00000442552 2185 ntBASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS9D1Q9Y2B5 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS9D1Q9Y2B5 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.83■□□□□ 0.13
VPS9D1Q9Y2B5 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS9D1Q9Y2B5 AP003680.1-201ENST00000598970 3660 ntBASIC15.83■□□□□ 0.13
VPS9D1Q9Y2B5 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS9D1Q9Y2B5 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS9D1Q9Y2B5 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS9D1Q9Y2B5 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS9D1Q9Y2B5 TMBIM7P-203ENST00000641617 1718 ntBASIC15.83■□□□□ 0.13
VPS9D1Q9Y2B5 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.83■□□□□ 0.12
VPS9D1Q9Y2B5 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms