Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 AC136604.1-201ENST00000418535 575 ntBASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 AC069120.2-201ENST00000524091 540 ntBASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 AC140878.1-201ENST00000565277 250 ntBASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 AL138828.2-201ENST00000615812 383 ntBASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 AC073592.8-201ENST00000624126 511 ntBASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 AC020658.6-201ENST00000623564 1870 ntBASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 AL607033.1-201ENST00000623900 1599 ntBASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 SERBP1P3-201ENST00000459980 809 ntBASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 TEX28P1-201ENST00000613479 1221 ntBASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 TEX28P2-201ENST00000617764 1221 ntBASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
AP4E1Q9UPM8 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
AP4E1Q9UPM8 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
AP4E1Q9UPM8 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.46■□□□□ 0.22
AP4E1Q9UPM8 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
AP4E1Q9UPM8 AC105250.1-201ENST00000509378 2057 ntBASIC16.46■□□□□ 0.22
AP4E1Q9UPM8 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
AP4E1Q9UPM8 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 493.7 ms