Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SNX18-202ENST00000343017 3140 ntBASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 CD99-202ENST00000381180 530 ntTSL 2 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 ATP6V0CP3-201ENST00000417255 467 ntBASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 AC108073.2-201ENST00000464002 357 ntBASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 TOLLIP-AS1-201ENST00000530897 939 ntBASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 MIR4515-201ENST00000584082 81 ntBASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 AL031055.1-201ENST00000606362 631 ntBASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 AC012313.10-201ENST00000623509 926 ntBASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CHMP1AQ9HD42 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 AC006486.2-201ENST00000624246 2199 ntBASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 AP002414.3-201ENST00000589352 1468 ntBASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 SLC4A1APP2-201ENST00000424054 1259 ntBASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 FAM197Y8-203ENST00000450145 560 ntBASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 TPO-203ENST00000346956 2923 ntTSL 5 BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CHMP1AQ9HD42 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms