Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC13.58□□□□□ -0.24
COL12A1Q99715 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL12A1Q99715 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL12A1Q99715 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC13.58□□□□□ -0.24
COL12A1Q99715 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
COL12A1Q99715 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL12A1Q99715 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL12A1Q99715 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC13.58□□□□□ -0.24
COL12A1Q99715 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
COL12A1Q99715 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL12A1Q99715 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL12A1Q99715 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL12A1Q99715 HNRNPA1P63-201ENST00000427917 963 ntBASIC13.58□□□□□ -0.24
COL12A1Q99715 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC13.58□□□□□ -0.24
COL12A1Q99715 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL12A1Q99715 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL12A1Q99715 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL12A1Q99715 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC13.58□□□□□ -0.24
COL12A1Q99715 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL12A1Q99715 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC13.58□□□□□ -0.24
COL12A1Q99715 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL12A1Q99715 AC008764.6-201ENST00000595909 2069 ntBASIC13.58□□□□□ -0.24
COL12A1Q99715 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC13.58□□□□□ -0.24
COL12A1Q99715 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC13.58□□□□□ -0.24
COL12A1Q99715 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
COL12A1Q99715 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL12A1Q99715 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL12A1Q99715 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL12A1Q99715 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC13.58□□□□□ -0.24
COL12A1Q99715 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC13.58□□□□□ -0.24
COL12A1Q99715 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL12A1Q99715 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL12A1Q99715 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC13.58□□□□□ -0.24
COL12A1Q99715 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC13.58□□□□□ -0.24
COL12A1Q99715 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC13.58□□□□□ -0.24
COL12A1Q99715 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC13.58□□□□□ -0.24
COL12A1Q99715 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL12A1Q99715 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC13.57□□□□□ -0.24
COL12A1Q99715 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
COL12A1Q99715 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
COL12A1Q99715 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL12A1Q99715 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL12A1Q99715 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC13.57□□□□□ -0.24
COL12A1Q99715 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
COL12A1Q99715 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
COL12A1Q99715 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC13.57□□□□□ -0.24
COL12A1Q99715 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL12A1Q99715 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL12A1Q99715 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
COL12A1Q99715 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL12A1Q99715 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL12A1Q99715 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC13.57□□□□□ -0.24
COL12A1Q99715 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL12A1Q99715 AP005019.2-201ENST00000615104 511 ntBASIC13.57□□□□□ -0.24
COL12A1Q99715 MIR6858-201ENST00000620733 67 ntBASIC13.57□□□□□ -0.24
COL12A1Q99715 AL161773.1-201ENST00000624845 863 ntBASIC13.57□□□□□ -0.24
COL12A1Q99715 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL12A1Q99715 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL12A1Q99715 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC13.57□□□□□ -0.24
COL12A1Q99715 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL12A1Q99715 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL12A1Q99715 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL12A1Q99715 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL12A1Q99715 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC13.57□□□□□ -0.24
COL12A1Q99715 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL12A1Q99715 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
COL12A1Q99715 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC13.57□□□□□ -0.24
COL12A1Q99715 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC13.57□□□□□ -0.24
COL12A1Q99715 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC13.57□□□□□ -0.24
COL12A1Q99715 RN7SKP214-201ENST00000364208 315 ntBASIC13.57□□□□□ -0.24
COL12A1Q99715 RGS5-214ENST00000429865 754 ntTSL 3 BASIC13.57□□□□□ -0.24
COL12A1Q99715 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC13.57□□□□□ -0.24
COL12A1Q99715 REEP5-205ENST00000504247 480 ntTSL 5 BASIC13.57□□□□□ -0.24
COL12A1Q99715 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC13.57□□□□□ -0.24
COL12A1Q99715 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC13.57□□□□□ -0.24
COL12A1Q99715 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC13.57□□□□□ -0.24
COL12A1Q99715 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC13.57□□□□□ -0.24
COL12A1Q99715 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC13.57□□□□□ -0.24
COL12A1Q99715 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL12A1Q99715 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL12A1Q99715 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL12A1Q99715 OS9-205ENST00000413095 1660 ntTSL 2 BASIC13.57□□□□□ -0.24
COL12A1Q99715 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC13.57□□□□□ -0.24
COL12A1Q99715 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
COL12A1Q99715 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL12A1Q99715 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
COL12A1Q99715 CTSL-202ENST00000342020 933 ntTSL 2 BASIC13.56□□□□□ -0.24
COL12A1Q99715 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL12A1Q99715 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC13.56□□□□□ -0.24
COL12A1Q99715 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC13.56□□□□□ -0.24
COL12A1Q99715 AC011742.3-201ENST00000439053 820 ntBASIC13.56□□□□□ -0.24
COL12A1Q99715 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC13.56□□□□□ -0.24
COL12A1Q99715 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL12A1Q99715 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC13.56□□□□□ -0.24
COL12A1Q99715 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL12A1Q99715 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.56□□□□□ -0.24
COL12A1Q99715 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL12A1Q99715 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL12A1Q99715 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
COL12A1Q99715 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms