Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 AL591424.1-201ENST00000442569 1213 ntBASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 AC243562.1-201ENST00000560672 389 ntBASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ATG4AQ8WYN0 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 AC106881.1-201ENST00000605849 3329 ntBASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 SPCS2P4-201ENST00000436160 681 ntBASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 KRT8P48-201ENST00000515599 1220 ntBASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 FAM197Y3-203ENST00000618346 717 ntBASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.48■□□□□ 0.23
ATG4AQ8WYN0 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 FAM220BP-201ENST00000377689 816 ntBASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 AC004987.2-201ENST00000395959 1148 ntBASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.47■□□□□ 0.23
ATG4AQ8WYN0 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms