Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 ADAMTS10-211ENST00000597188 3749 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 MIR3909-201ENST00000579518 119 ntBASIC4.95□□□□□ -1.62
SYNE1Q8NF91 MIR4259-201ENST00000584466 101 ntBASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AC004233.3-201ENST00000607794 1269 ntBASIC4.95□□□□□ -1.62
SYNE1Q8NF91 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AC011270.2-201ENST00000624293 2550 ntBASIC4.95□□□□□ -1.62
SYNE1Q8NF91 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AGGF1P2-201ENST00000426656 2106 ntBASIC4.95□□□□□ -1.62
SYNE1Q8NF91 GNAS-214ENST00000371100 4029 ntTSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 MTND6P24-201ENST00000440466 518 ntBASIC4.95□□□□□ -1.62
SYNE1Q8NF91 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AL606495.2-201ENST00000605867 535 ntBASIC4.95□□□□□ -1.62
SYNE1Q8NF91 MIR6752-201ENST00000618442 71 ntBASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 CTBP2P3-201ENST00000585629 1255 ntBASIC4.95□□□□□ -1.62
SYNE1Q8NF91 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 IFT20-216ENST00000588477 774 ntTSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 SERF2-217ENST00000630046 862 ntTSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SYNE1Q8NF91 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 AC098859.1-201ENST00000502915 1238 ntBASIC4.94□□□□□ -1.62
SYNE1Q8NF91 USB1-203ENST00000539737 1212 ntTSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 FGFRL1-202ENST00000398484 3639 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms