Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 LBH-203ENST00000404397 543 ntTSL 4 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 BANF1P1-201ENST00000553684 263 ntBASIC14.11□□□□□ -0.15
SKA3Q8IX90 AC243562.2-201ENST00000561247 970 ntBASIC14.11□□□□□ -0.15
SKA3Q8IX90 AC025678.2-201ENST00000562061 970 ntBASIC14.11□□□□□ -0.15
SKA3Q8IX90 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 AC007967.4-201ENST00000614700 386 ntBASIC14.11□□□□□ -0.15
SKA3Q8IX90 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.11□□□□□ -0.15
SKA3Q8IX90 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SKA3Q8IX90 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 MBP-202ENST00000355994 2772 ntTSL 5 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.1□□□□□ -0.15
SKA3Q8IX90 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 Z92544.3-201ENST00000624747 417 ntBASIC14.1□□□□□ -0.15
SKA3Q8IX90 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
SKA3Q8IX90 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 AL365209.1-201ENST00000624418 6473 ntBASIC14.1□□□□□ -0.15
SKA3Q8IX90 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SKA3Q8IX90 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms