Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 FAM8A4P-201ENST00000435433 1213 ntBASIC21.19■□□□□ 0.98
NPHP3Q7Z494 MSRA-203ENST00000441698 788 ntTSL 2 BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 AC024681.1-201ENST00000521917 487 ntBASIC21.19■□□□□ 0.98
NPHP3Q7Z494 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 AC005730.2-201ENST00000564549 1184 ntBASIC21.19■□□□□ 0.98
NPHP3Q7Z494 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 AC018635.2-201ENST00000608625 364 ntBASIC21.19■□□□□ 0.98
NPHP3Q7Z494 PRSS30P-206ENST00000641773 873 ntBASIC21.19■□□□□ 0.98
NPHP3Q7Z494 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP3Q7Z494 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 CRCP-204ENST00000398684 492 ntTSL 2 BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 AC007274.2-201ENST00000421675 662 ntBASIC21.18■□□□□ 0.98
NPHP3Q7Z494 EEF1DP6-201ENST00000449232 372 ntBASIC21.18■□□□□ 0.98
NPHP3Q7Z494 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 AC018892.3-201ENST00000623986 2499 ntBASIC21.18■□□□□ 0.98
NPHP3Q7Z494 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP3Q7Z494 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 AC008132.1-202ENST00000342005 1389 ntBASIC21.17■□□□□ 0.98
NPHP3Q7Z494 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 TBCB-211ENST00000589996 724 ntTSL 3 BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC21.17■□□□□ 0.98
NPHP3Q7Z494 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 HTR7P1-202ENST00000624664 4411 ntBASIC21.16■□□□□ 0.98
NPHP3Q7Z494 AMT-233ENST00000636522 1620 ntTSL 2 BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP3Q7Z494 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms