Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC13.65□□□□□ -0.22
ABCA4P78363 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC13.65□□□□□ -0.22
ABCA4P78363 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC13.65□□□□□ -0.22
ABCA4P78363 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC13.65□□□□□ -0.22
ABCA4P78363 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC13.65□□□□□ -0.22
ABCA4P78363 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC13.65□□□□□ -0.23
ABCA4P78363 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC13.64□□□□□ -0.23
ABCA4P78363 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
ABCA4P78363 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
ABCA4P78363 REXO1L1P-202ENST00000608646 1974 ntBASIC13.64□□□□□ -0.23
ABCA4P78363 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC13.64□□□□□ -0.23
ABCA4P78363 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC13.64□□□□□ -0.23
ABCA4P78363 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC13.64□□□□□ -0.23
ABCA4P78363 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC13.64□□□□□ -0.23
ABCA4P78363 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC13.64□□□□□ -0.23
ABCA4P78363 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 CYP2AB1P-202ENST00000454440 1456 ntBASIC13.64□□□□□ -0.23
ABCA4P78363 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 LBX2-201ENST00000341396 886 ntTSL 3 BASIC13.64□□□□□ -0.23
ABCA4P78363 CALR4P-201ENST00000431943 946 ntBASIC13.64□□□□□ -0.23
ABCA4P78363 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC13.64□□□□□ -0.23
ABCA4P78363 AC120045.2-201ENST00000567334 178 ntBASIC13.64□□□□□ -0.23
ABCA4P78363 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC13.64□□□□□ -0.23
ABCA4P78363 ABBA01031660.1-201ENST00000635219 756 ntBASIC13.64□□□□□ -0.23
ABCA4P78363 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
ABCA4P78363 LINC01144-201ENST00000626198 1710 ntBASIC13.64□□□□□ -0.23
ABCA4P78363 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 REXO1L8P-201ENST00000604378 1897 ntBASIC13.64□□□□□ -0.23
ABCA4P78363 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
ABCA4P78363 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
ABCA4P78363 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC13.64□□□□□ -0.23
ABCA4P78363 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
ABCA4P78363 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA4P78363 MGST3-203ENST00000367885 680 ntTSL 2 BASIC13.64□□□□□ -0.23
ABCA4P78363 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC13.64□□□□□ -0.23
ABCA4P78363 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC13.64□□□□□ -0.23
ABCA4P78363 AC012441.1-201ENST00000446669 685 ntBASIC13.64□□□□□ -0.23
ABCA4P78363 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC13.64□□□□□ -0.23
ABCA4P78363 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
ABCA4P78363 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.64□□□□□ -0.23
ABCA4P78363 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC13.64□□□□□ -0.23
ABCA4P78363 AP000812.2-201ENST00000538934 718 ntBASIC13.64□□□□□ -0.23
ABCA4P78363 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC13.64□□□□□ -0.23
ABCA4P78363 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC13.64□□□□□ -0.23
ABCA4P78363 AC244669.2-201ENST00000612320 853 ntBASIC13.64□□□□□ -0.23
ABCA4P78363 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC13.64□□□□□ -0.23
ABCA4P78363 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
ABCA4P78363 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC13.63□□□□□ -0.23
ABCA4P78363 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC13.63□□□□□ -0.23
ABCA4P78363 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC13.63□□□□□ -0.23
ABCA4P78363 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
ABCA4P78363 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC13.63□□□□□ -0.23
ABCA4P78363 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC13.63□□□□□ -0.23
ABCA4P78363 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC13.63□□□□□ -0.23
ABCA4P78363 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
ABCA4P78363 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ABCA4P78363 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC13.63□□□□□ -0.23
ABCA4P78363 AL355864.2-201ENST00000447420 863 ntBASIC13.63□□□□□ -0.23
ABCA4P78363 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ABCA4P78363 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
ABCA4P78363 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC13.63□□□□□ -0.23
ABCA4P78363 RETN-203ENST00000629642 400 ntTSL 5 BASIC13.63□□□□□ -0.23
ABCA4P78363 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
ABCA4P78363 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC13.63□□□□□ -0.23
ABCA4P78363 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC13.63□□□□□ -0.23
ABCA4P78363 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC13.63□□□□□ -0.23
ABCA4P78363 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
ABCA4P78363 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC13.63□□□□□ -0.23
ABCA4P78363 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ABCA4P78363 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
ABCA4P78363 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC13.63□□□□□ -0.23
ABCA4P78363 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ABCA4P78363 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
ABCA4P78363 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC13.63□□□□□ -0.23
ABCA4P78363 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
ABCA4P78363 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
ABCA4P78363 AC136604.1-201ENST00000418535 575 ntBASIC13.62□□□□□ -0.23
ABCA4P78363 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC13.62□□□□□ -0.23
ABCA4P78363 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms