Protein–RNA interactions for Protein: P55055

NR1H2, Oxysterols receptor LXR-beta, humanhuman

Predictions only

Length 460 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H2P55055 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
NR1H2P55055 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC15.16■□□□□ 0.02
NR1H2P55055 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NR1H2P55055 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.16■□□□□ 0.02
NR1H2P55055 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.16■□□□□ 0.02
NR1H2P55055 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NR1H2P55055 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NR1H2P55055 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NR1H2P55055 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.16■□□□□ 0.02
NR1H2P55055 AC007686.3-201ENST00000619017 3487 ntBASIC15.16■□□□□ 0.02
NR1H2P55055 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
NR1H2P55055 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
NR1H2P55055 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC15.16■□□□□ 0.02
NR1H2P55055 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NR1H2P55055 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.16■□□□□ 0.02
NR1H2P55055 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.16■□□□□ 0.02
NR1H2P55055 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
NR1H2P55055 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.16■□□□□ 0.02
NR1H2P55055 RPS8P6-201ENST00000426177 609 ntBASIC15.16■□□□□ 0.02
NR1H2P55055 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NR1H2P55055 AC009947.1-201ENST00000444350 727 ntBASIC15.16■□□□□ 0.02
NR1H2P55055 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.16■□□□□ 0.02
NR1H2P55055 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.16■□□□□ 0.02
NR1H2P55055 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.16■□□□□ 0.02
NR1H2P55055 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NR1H2P55055 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NR1H2P55055 AC004706.3-202ENST00000621574 984 ntBASIC15.16■□□□□ 0.02
NR1H2P55055 AC055717.3-201ENST00000622967 595 ntBASIC15.16■□□□□ 0.02
NR1H2P55055 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
NR1H2P55055 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
NR1H2P55055 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NR1H2P55055 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NR1H2P55055 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NR1H2P55055 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
NR1H2P55055 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NR1H2P55055 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
NR1H2P55055 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.16■□□□□ 0.02
NR1H2P55055 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
NR1H2P55055 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.16■□□□□ 0.02
NR1H2P55055 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC15.15■□□□□ 0.02
NR1H2P55055 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.15■□□□□ 0.02
NR1H2P55055 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.15■□□□□ 0.02
NR1H2P55055 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
NR1H2P55055 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 CNTNAP3P2-201ENST00000617175 3861 ntBASIC15.15■□□□□ 0.02
NR1H2P55055 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
NR1H2P55055 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.15■□□□□ 0.02
NR1H2P55055 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.15■□□□□ 0.02
NR1H2P55055 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.15■□□□□ 0.02
NR1H2P55055 AC108751.1-201ENST00000490852 363 ntBASIC15.15■□□□□ 0.02
NR1H2P55055 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.15■□□□□ 0.02
NR1H2P55055 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.15■□□□□ 0.02
NR1H2P55055 AC002347.1-201ENST00000569543 541 ntBASIC15.15■□□□□ 0.02
NR1H2P55055 AL359183.1-201ENST00000623796 2132 ntBASIC15.15■□□□□ 0.02
NR1H2P55055 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 AC079781.5-202ENST00000641784 3743 ntBASIC15.15■□□□□ 0.02
NR1H2P55055 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.15■□□□□ 0.02
NR1H2P55055 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
NR1H2P55055 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.15■□□□□ 0.02
NR1H2P55055 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.15■□□□□ 0.02
NR1H2P55055 AC132938.5-201ENST00000624980 1813 ntBASIC15.15■□□□□ 0.02
NR1H2P55055 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NR1H2P55055 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H2P55055 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H2P55055 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H2P55055 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H2P55055 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC15.14■□□□□ 0.01
NR1H2P55055 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
NR1H2P55055 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
NR1H2P55055 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
NR1H2P55055 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
NR1H2P55055 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
NR1H2P55055 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms