Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA3P32297 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA3P32297 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA3P32297 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CHRNA3P32297 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA3P32297 AP001282.1-201ENST00000531301 1499 ntBASIC16.79■□□□□ 0.28
CHRNA3P32297 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA3P32297 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHRNA3P32297 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.79■□□□□ 0.28
CHRNA3P32297 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHRNA3P32297 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHRNA3P32297 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHRNA3P32297 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.78■□□□□ 0.28
CHRNA3P32297 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
CHRNA3P32297 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHRNA3P32297 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHRNA3P32297 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHRNA3P32297 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHRNA3P32297 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CHRNA3P32297 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CHRNA3P32297 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHRNA3P32297 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHRNA3P32297 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHRNA3P32297 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHRNA3P32297 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHRNA3P32297 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
CHRNA3P32297 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
CHRNA3P32297 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.78■□□□□ 0.28
CHRNA3P32297 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
CHRNA3P32297 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.78■□□□□ 0.28
CHRNA3P32297 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.78■□□□□ 0.28
CHRNA3P32297 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.78■□□□□ 0.28
CHRNA3P32297 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.78■□□□□ 0.28
CHRNA3P32297 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHRNA3P32297 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.78■□□□□ 0.28
CHRNA3P32297 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.78■□□□□ 0.28
CHRNA3P32297 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHRNA3P32297 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.78■□□□□ 0.28
CHRNA3P32297 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.78■□□□□ 0.28
CHRNA3P32297 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.78■□□□□ 0.28
CHRNA3P32297 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.78■□□□□ 0.28
CHRNA3P32297 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHRNA3P32297 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.78■□□□□ 0.28
CHRNA3P32297 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.78■□□□□ 0.28
CHRNA3P32297 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CHRNA3P32297 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHRNA3P32297 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHRNA3P32297 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.78■□□□□ 0.28
CHRNA3P32297 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.78■□□□□ 0.28
CHRNA3P32297 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHRNA3P32297 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.78■□□□□ 0.28
CHRNA3P32297 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.78■□□□□ 0.28
CHRNA3P32297 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.78■□□□□ 0.28
CHRNA3P32297 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHRNA3P32297 AC105250.1-201ENST00000509378 2057 ntBASIC16.77■□□□□ 0.28
CHRNA3P32297 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.77■□□□□ 0.28
CHRNA3P32297 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
CHRNA3P32297 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHRNA3P32297 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.77■□□□□ 0.28
CHRNA3P32297 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHRNA3P32297 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.77■□□□□ 0.28
CHRNA3P32297 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.77■□□□□ 0.28
CHRNA3P32297 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHRNA3P32297 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
CHRNA3P32297 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.77■□□□□ 0.28
CHRNA3P32297 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHRNA3P32297 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
CHRNA3P32297 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.28
CHRNA3P32297 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHRNA3P32297 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHRNA3P32297 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.77■□□□□ 0.28
CHRNA3P32297 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHRNA3P32297 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
CHRNA3P32297 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.77■□□□□ 0.28
CHRNA3P32297 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.77■□□□□ 0.28
CHRNA3P32297 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.77■□□□□ 0.28
CHRNA3P32297 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
CHRNA3P32297 AL138918.1-201ENST00000568306 659 ntBASIC16.77■□□□□ 0.28
CHRNA3P32297 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.77■□□□□ 0.28
CHRNA3P32297 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.77■□□□□ 0.28
CHRNA3P32297 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.77■□□□□ 0.28
CHRNA3P32297 AL355385.1-201ENST00000606123 409 ntBASIC16.77■□□□□ 0.28
CHRNA3P32297 AC084121.4-201ENST00000641598 221 ntBASIC16.77■□□□□ 0.28
CHRNA3P32297 AF228730.8-201ENST00000642140 221 ntBASIC16.77■□□□□ 0.28
CHRNA3P32297 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.77■□□□□ 0.28
CHRNA3P32297 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.77■□□□□ 0.27
CHRNA3P32297 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHRNA3P32297 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHRNA3P32297 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHRNA3P32297 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
CHRNA3P32297 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CHRNA3P32297 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHRNA3P32297 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
CHRNA3P32297 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.77■□□□□ 0.27
CHRNA3P32297 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHRNA3P32297 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
CHRNA3P32297 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHRNA3P32297 AC090616.6-203ENST00000579186 1945 ntBASIC16.76■□□□□ 0.27
CHRNA3P32297 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CHRNA3P32297 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms