Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
MSX1P28360 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
MSX1P28360 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
MSX1P28360 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
MSX1P28360 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.57□□□□□ -0.08
MSX1P28360 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
MSX1P28360 AL162727.3-201ENST00000635661 2787 ntBASIC14.56□□□□□ -0.08
MSX1P28360 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC14.56□□□□□ -0.08
MSX1P28360 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.56□□□□□ -0.08
MSX1P28360 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
MSX1P28360 AC022188.1-201ENST00000620960 1664 ntBASIC14.56□□□□□ -0.08
MSX1P28360 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.56□□□□□ -0.08
MSX1P28360 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
MSX1P28360 COX5BP8-201ENST00000416911 349 ntBASIC14.56□□□□□ -0.08
MSX1P28360 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.56□□□□□ -0.08
MSX1P28360 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.56□□□□□ -0.08
MSX1P28360 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.56□□□□□ -0.08
MSX1P28360 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.56□□□□□ -0.08
MSX1P28360 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.56□□□□□ -0.08
MSX1P28360 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.56□□□□□ -0.08
MSX1P28360 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
MSX1P28360 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC14.56□□□□□ -0.08
MSX1P28360 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.56□□□□□ -0.08
MSX1P28360 SPIB-207ENST00000597855 564 ntTSL 4 BASIC14.56□□□□□ -0.08
MSX1P28360 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
MSX1P28360 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
MSX1P28360 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.56□□□□□ -0.08
MSX1P28360 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
MSX1P28360 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
MSX1P28360 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
MSX1P28360 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
MSX1P28360 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.56□□□□□ -0.08
MSX1P28360 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
MSX1P28360 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC14.56□□□□□ -0.08
MSX1P28360 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.55□□□□□ -0.08
MSX1P28360 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.55□□□□□ -0.08
MSX1P28360 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.55□□□□□ -0.08
MSX1P28360 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
MSX1P28360 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.55□□□□□ -0.08
MSX1P28360 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.55□□□□□ -0.08
MSX1P28360 AL080243.2-201ENST00000418783 582 ntBASIC14.55□□□□□ -0.08
MSX1P28360 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC14.55□□□□□ -0.08
MSX1P28360 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.55□□□□□ -0.08
MSX1P28360 SPTLC1P1-201ENST00000447199 261 ntBASIC14.55□□□□□ -0.08
MSX1P28360 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.55□□□□□ -0.08
MSX1P28360 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.55□□□□□ -0.08
MSX1P28360 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 MEIS3P1-201ENST00000495167 958 ntBASIC14.55□□□□□ -0.08
MSX1P28360 AL008721.1-201ENST00000609964 604 ntBASIC14.55□□□□□ -0.08
MSX1P28360 AC005786.4-201ENST00000623369 682 ntBASIC14.55□□□□□ -0.08
MSX1P28360 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.55□□□□□ -0.08
MSX1P28360 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.55□□□□□ -0.08
MSX1P28360 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.55□□□□□ -0.08
MSX1P28360 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MSX1P28360 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms