Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC093004.1-201ENST00000508850 424 ntBASIC14.46□□□□□ -0.09
HOXD4P09016 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.46□□□□□ -0.09
HOXD4P09016 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.46□□□□□ -0.09
HOXD4P09016 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HOXD4P09016 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.46□□□□□ -0.09
HOXD4P09016 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.46□□□□□ -0.09
HOXD4P09016 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.46□□□□□ -0.09
HOXD4P09016 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.46□□□□□ -0.09
HOXD4P09016 TP53TG3HP-202ENST00000569755 579 ntBASIC14.46□□□□□ -0.09
HOXD4P09016 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HOXD4P09016 MIR4321-201ENST00000592276 80 ntBASIC14.46□□□□□ -0.09
HOXD4P09016 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.46□□□□□ -0.09
HOXD4P09016 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC14.46□□□□□ -0.09
HOXD4P09016 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.46□□□□□ -0.09
HOXD4P09016 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.46□□□□□ -0.09
HOXD4P09016 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HOXD4P09016 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.46□□□□□ -0.09
HOXD4P09016 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC14.46□□□□□ -0.09
HOXD4P09016 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
HOXD4P09016 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HOXD4P09016 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC14.46□□□□□ -0.1
HOXD4P09016 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
HOXD4P09016 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
HOXD4P09016 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.46□□□□□ -0.1
HOXD4P09016 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HOXD4P09016 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HOXD4P09016 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.46□□□□□ -0.1
HOXD4P09016 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HOXD4P09016 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
HOXD4P09016 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC14.45□□□□□ -0.1
HOXD4P09016 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
HOXD4P09016 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 AC007541.1-201ENST00000570282 1469 ntBASIC14.45□□□□□ -0.1
HOXD4P09016 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.45□□□□□ -0.1
HOXD4P09016 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC14.45□□□□□ -0.1
HOXD4P09016 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
HOXD4P09016 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HOXD4P09016 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
HOXD4P09016 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HOXD4P09016 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC14.45□□□□□ -0.1
HOXD4P09016 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.45□□□□□ -0.1
HOXD4P09016 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
HOXD4P09016 AC114501.2-201ENST00000439631 535 ntBASIC14.45□□□□□ -0.1
HOXD4P09016 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC14.45□□□□□ -0.1
HOXD4P09016 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.45□□□□□ -0.1
HOXD4P09016 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HOXD4P09016 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.45□□□□□ -0.1
HOXD4P09016 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.45□□□□□ -0.1
HOXD4P09016 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.45□□□□□ -0.1
HOXD4P09016 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC14.45□□□□□ -0.1
HOXD4P09016 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC14.45□□□□□ -0.1
HOXD4P09016 AC010336.2-201ENST00000564226 506 ntBASIC14.45□□□□□ -0.1
HOXD4P09016 AC005622.1-201ENST00000636801 1703 ntBASIC14.45□□□□□ -0.1
HOXD4P09016 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC14.45□□□□□ -0.1
HOXD4P09016 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC14.45□□□□□ -0.1
HOXD4P09016 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD4P09016 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.44□□□□□ -0.1
HOXD4P09016 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.44□□□□□ -0.1
HOXD4P09016 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
HOXD4P09016 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.44□□□□□ -0.1
HOXD4P09016 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.44□□□□□ -0.1
HOXD4P09016 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.44□□□□□ -0.1
HOXD4P09016 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms