Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
APOBP04114 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC9.63□□□□□ -0.87
APOBP04114 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC9.63□□□□□ -0.87
APOBP04114 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC9.63□□□□□ -0.87
APOBP04114 AC087045.2-201ENST00000606279 1003 ntBASIC9.63□□□□□ -0.87
APOBP04114 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC9.63□□□□□ -0.87
APOBP04114 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC9.63□□□□□ -0.87
APOBP04114 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC9.63□□□□□ -0.87
APOBP04114 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC9.63□□□□□ -0.87
APOBP04114 AL158070.2-201ENST00000623713 1621 ntBASIC9.63□□□□□ -0.87
APOBP04114 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC9.63□□□□□ -0.87
APOBP04114 AC105137.3-201ENST00000617588 984 ntBASIC9.63□□□□□ -0.87
APOBP04114 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC9.63□□□□□ -0.87
APOBP04114 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
APOBP04114 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC9.63□□□□□ -0.87
APOBP04114 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC9.63□□□□□ -0.87
APOBP04114 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC9.63□□□□□ -0.87
APOBP04114 RN7SKP214-201ENST00000364208 315 ntBASIC9.63□□□□□ -0.87
APOBP04114 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 AC010141.1-201ENST00000411585 623 ntBASIC9.63□□□□□ -0.87
APOBP04114 AC027139.1-201ENST00000565286 951 ntBASIC9.63□□□□□ -0.87
APOBP04114 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC9.63□□□□□ -0.87
APOBP04114 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 ANKRD30BP2-201ENST00000435744 1610 ntBASIC9.63□□□□□ -0.87
APOBP04114 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
APOBP04114 AC022188.1-201ENST00000620960 1664 ntBASIC9.63□□□□□ -0.87
APOBP04114 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC9.63□□□□□ -0.87
APOBP04114 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC9.63□□□□□ -0.87
APOBP04114 AL450472.2-201ENST00000603663 1156 ntBASIC9.63□□□□□ -0.87
APOBP04114 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC9.63□□□□□ -0.87
APOBP04114 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
APOBP04114 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
APOBP04114 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC9.62□□□□□ -0.87
APOBP04114 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC9.62□□□□□ -0.87
APOBP04114 AC120498.9-201ENST00000339021 3867 ntBASIC9.62□□□□□ -0.87
APOBP04114 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC9.62□□□□□ -0.87
APOBP04114 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC9.62□□□□□ -0.87
APOBP04114 NAT9-211ENST00000580632 799 ntTSL 3 BASIC9.62□□□□□ -0.87
APOBP04114 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
APOBP04114 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC9.62□□□□□ -0.87
APOBP04114 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC9.62□□□□□ -0.87
APOBP04114 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC9.62□□□□□ -0.87
APOBP04114 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 AC011742.3-201ENST00000439053 820 ntBASIC9.62□□□□□ -0.87
APOBP04114 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC9.62□□□□□ -0.87
APOBP04114 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC9.62□□□□□ -0.87
APOBP04114 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC9.62□□□□□ -0.87
APOBP04114 AC051619.9-201ENST00000623237 597 ntBASIC9.62□□□□□ -0.87
APOBP04114 AC127024.7-201ENST00000625101 200 ntBASIC9.62□□□□□ -0.87
APOBP04114 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC9.62□□□□□ -0.87
APOBP04114 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC9.62□□□□□ -0.87
APOBP04114 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC9.62□□□□□ -0.87
APOBP04114 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC9.62□□□□□ -0.87
APOBP04114 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC9.62□□□□□ -0.87
APOBP04114 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC9.62□□□□□ -0.87
APOBP04114 HKR1-225ENST00000592168 566 ntTSL 4 BASIC9.62□□□□□ -0.87
APOBP04114 AC103691.2-201ENST00000618824 433 ntBASIC9.62□□□□□ -0.87
APOBP04114 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC9.62□□□□□ -0.87
APOBP04114 AC106820.2-201ENST00000563775 3264 ntBASIC9.62□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms