Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A1P02462 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A1P02462 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A1P02462 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19.01■□□□□ 0.63
COL4A1P02462 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
COL4A1P02462 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC19.01■□□□□ 0.63
COL4A1P02462 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A1P02462 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A1P02462 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A1P02462 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC19.01■□□□□ 0.63
COL4A1P02462 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A1P02462 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A1P02462 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A1P02462 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A1P02462 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
COL4A1P02462 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
COL4A1P02462 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC19.01■□□□□ 0.63
COL4A1P02462 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC19.01■□□□□ 0.63
COL4A1P02462 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
COL4A1P02462 EEF1DP1-201ENST00000585891 896 ntBASIC19.01■□□□□ 0.63
COL4A1P02462 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A1P02462 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC19.01■□□□□ 0.63
COL4A1P02462 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A1P02462 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A1P02462 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A1P02462 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
COL4A1P02462 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A1P02462 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A1P02462 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC19■□□□□ 0.63
COL4A1P02462 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
COL4A1P02462 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A1P02462 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC19■□□□□ 0.63
COL4A1P02462 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC19■□□□□ 0.63
COL4A1P02462 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A1P02462 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A1P02462 PCDHB19P-201ENST00000570871 2371 ntBASIC19■□□□□ 0.63
COL4A1P02462 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A1P02462 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A1P02462 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL4A1P02462 HLA-K-203ENST00000430151 1046 ntBASIC19■□□□□ 0.63
COL4A1P02462 HOMER2P2-201ENST00000451621 847 ntBASIC19■□□□□ 0.63
COL4A1P02462 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL4A1P02462 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL4A1P02462 AC005730.2-201ENST00000564549 1184 ntBASIC19■□□□□ 0.63
COL4A1P02462 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC19■□□□□ 0.63
COL4A1P02462 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A1P02462 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A1P02462 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
COL4A1P02462 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A1P02462 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL4A1P02462 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A1P02462 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A1P02462 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
COL4A1P02462 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC19■□□□□ 0.63
COL4A1P02462 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19■□□□□ 0.63
COL4A1P02462 KRT8P14-201ENST00000414254 1442 ntBASIC19■□□□□ 0.63
COL4A1P02462 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
COL4A1P02462 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A1P02462 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A1P02462 ILF3-AS1-201ENST00000591501 1983 ntBASIC18.99■□□□□ 0.63
COL4A1P02462 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC18.99■□□□□ 0.63
COL4A1P02462 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A1P02462 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A1P02462 TISP43-201ENST00000409793 538 ntTSL 4 BASIC18.99■□□□□ 0.63
COL4A1P02462 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A1P02462 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC18.99■□□□□ 0.63
COL4A1P02462 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC18.99■□□□□ 0.63
COL4A1P02462 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A1P02462 RNA5SP486-201ENST00000515961 83 ntBASIC18.99■□□□□ 0.63
COL4A1P02462 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
COL4A1P02462 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC18.99■□□□□ 0.63
COL4A1P02462 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A1P02462 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
COL4A1P02462 AC127383.1-201ENST00000444697 1800 ntBASIC18.99■□□□□ 0.63
COL4A1P02462 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
COL4A1P02462 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A1P02462 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC18.99■□□□□ 0.63
COL4A1P02462 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
COL4A1P02462 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
COL4A1P02462 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A1P02462 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A1P02462 AC092127.1-201ENST00000567093 3455 ntBASIC18.99■□□□□ 0.63
COL4A1P02462 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC18.99■□□□□ 0.63
COL4A1P02462 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A1P02462 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
COL4A1P02462 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A1P02462 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A1P02462 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A1P02462 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
COL4A1P02462 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC18.98■□□□□ 0.63
COL4A1P02462 AL139094.1-201ENST00000405549 1188 ntBASIC18.98■□□□□ 0.63
COL4A1P02462 MIR663B-201ENST00000408361 115 ntBASIC18.98■□□□□ 0.63
COL4A1P02462 NME6-203ENST00000415644 849 ntTSL 2 BASIC18.98■□□□□ 0.63
COL4A1P02462 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A1P02462 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.98■□□□□ 0.63
COL4A1P02462 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC18.98■□□□□ 0.63
COL4A1P02462 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC18.98■□□□□ 0.63
COL4A1P02462 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A1P02462 RHOQP1-201ENST00000555758 579 ntBASIC18.98■□□□□ 0.63
COL4A1P02462 AC106820.3-201ENST00000561653 397 ntBASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms