Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SEMA3DO95025 AC126177.1-201ENST00000547829 2218 ntBASIC15.27■□□□□ 0.04
SEMA3DO95025 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SEMA3DO95025 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
SEMA3DO95025 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SEMA3DO95025 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SEMA3DO95025 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SEMA3DO95025 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
SEMA3DO95025 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SEMA3DO95025 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
SEMA3DO95025 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.27■□□□□ 0.04
SEMA3DO95025 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.27■□□□□ 0.04
SEMA3DO95025 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.27■□□□□ 0.04
SEMA3DO95025 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.27■□□□□ 0.04
SEMA3DO95025 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.27■□□□□ 0.04
SEMA3DO95025 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.27■□□□□ 0.04
SEMA3DO95025 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.27■□□□□ 0.04
SEMA3DO95025 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SEMA3DO95025 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
SEMA3DO95025 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.27■□□□□ 0.03
SEMA3DO95025 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SEMA3DO95025 TCAF2P1-201ENST00000291129 2421 ntBASIC15.27■□□□□ 0.03
SEMA3DO95025 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.27■□□□□ 0.03
SEMA3DO95025 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.27■□□□□ 0.03
SEMA3DO95025 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.27■□□□□ 0.03
SEMA3DO95025 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SEMA3DO95025 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SEMA3DO95025 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.27■□□□□ 0.03
SEMA3DO95025 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 KRT8P37-201ENST00000451609 1420 ntBASIC15.26■□□□□ 0.03
SEMA3DO95025 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
SEMA3DO95025 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
SEMA3DO95025 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
SEMA3DO95025 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
SEMA3DO95025 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.26■□□□□ 0.03
SEMA3DO95025 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.26■□□□□ 0.03
SEMA3DO95025 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.26■□□□□ 0.03
SEMA3DO95025 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.26■□□□□ 0.03
SEMA3DO95025 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.26■□□□□ 0.03
SEMA3DO95025 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.26■□□□□ 0.03
SEMA3DO95025 RBPMS2P1-201ENST00000437762 623 ntBASIC15.26■□□□□ 0.03
SEMA3DO95025 SPDYE14P-201ENST00000442619 822 ntBASIC15.26■□□□□ 0.03
SEMA3DO95025 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.26■□□□□ 0.03
SEMA3DO95025 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.26■□□□□ 0.03
SEMA3DO95025 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.26■□□□□ 0.03
SEMA3DO95025 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.26■□□□□ 0.03
SEMA3DO95025 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.26■□□□□ 0.03
SEMA3DO95025 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.26■□□□□ 0.03
SEMA3DO95025 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.26■□□□□ 0.03
SEMA3DO95025 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.26■□□□□ 0.03
SEMA3DO95025 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SEMA3DO95025 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
SEMA3DO95025 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.26■□□□□ 0.03
SEMA3DO95025 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
SEMA3DO95025 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SEMA3DO95025 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SEMA3DO95025 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.25■□□□□ 0.03
SEMA3DO95025 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.25■□□□□ 0.03
SEMA3DO95025 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
SEMA3DO95025 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.25■□□□□ 0.03
SEMA3DO95025 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.25■□□□□ 0.03
SEMA3DO95025 AC026150.2-201ENST00000564693 1156 ntBASIC15.25■□□□□ 0.03
SEMA3DO95025 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.25■□□□□ 0.03
SEMA3DO95025 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.25■□□□□ 0.03
SEMA3DO95025 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.25■□□□□ 0.03
SEMA3DO95025 AC007967.4-201ENST00000614700 386 ntBASIC15.25■□□□□ 0.03
SEMA3DO95025 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SEMA3DO95025 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms