Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
RNF40O75150 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC17.24■□□□□ 0.35
RNF40O75150 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.24■□□□□ 0.35
RNF40O75150 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.24■□□□□ 0.35
RNF40O75150 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RNF40O75150 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 GSN-203ENST00000373808 2664 ntTSL 2 BASIC17.24■□□□□ 0.35
RNF40O75150 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNF40O75150 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC17.24■□□□□ 0.35
RNF40O75150 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF40O75150 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNF40O75150 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF40O75150 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
RNF40O75150 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.23■□□□□ 0.35
RNF40O75150 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC17.23■□□□□ 0.35
RNF40O75150 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC17.23■□□□□ 0.35
RNF40O75150 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
RNF40O75150 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC17.23■□□□□ 0.35
RNF40O75150 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF40O75150 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
RNF40O75150 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF40O75150 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC17.23■□□□□ 0.35
RNF40O75150 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
RNF40O75150 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNF40O75150 LINC00895-201ENST00000629028 1637 ntBASIC17.23■□□□□ 0.35
RNF40O75150 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
RNF40O75150 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.23■□□□□ 0.35
RNF40O75150 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF40O75150 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.23■□□□□ 0.35
RNF40O75150 BASP1P1-201ENST00000430708 665 ntBASIC17.23■□□□□ 0.35
RNF40O75150 AC055876.3-201ENST00000431496 288 ntBASIC17.23■□□□□ 0.35
RNF40O75150 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.23■□□□□ 0.35
RNF40O75150 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.23■□□□□ 0.35
RNF40O75150 KLF2P3-201ENST00000451977 1087 ntBASIC17.23■□□□□ 0.35
RNF40O75150 IGHV3-62-201ENST00000520057 340 ntBASIC17.23■□□□□ 0.35
RNF40O75150 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNF40O75150 AC005412.3-201ENST00000580309 715 ntBASIC17.23■□□□□ 0.35
RNF40O75150 RN7SL275P-201ENST00000582762 335 ntBASIC17.23■□□□□ 0.35
RNF40O75150 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF40O75150 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.23■□□□□ 0.35
RNF40O75150 AC138649.4-201ENST00000612222 287 ntBASIC17.23■□□□□ 0.35
RNF40O75150 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.23■□□□□ 0.35
RNF40O75150 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF40O75150 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF40O75150 AC112504.1-201ENST00000623415 1841 ntBASIC17.23■□□□□ 0.35
RNF40O75150 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.23■□□□□ 0.35
RNF40O75150 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC17.23■□□□□ 0.35
RNF40O75150 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNF40O75150 CICP4-201ENST00000447359 2812 ntBASIC17.23■□□□□ 0.35
RNF40O75150 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF40O75150 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
RNF40O75150 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC17.23■□□□□ 0.35
RNF40O75150 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF40O75150 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
RNF40O75150 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF40O75150 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF40O75150 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF40O75150 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF40O75150 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
RNF40O75150 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC17.22■□□□□ 0.35
RNF40O75150 CICP24-201ENST00000605464 2705 ntBASIC17.22■□□□□ 0.35
RNF40O75150 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.22■□□□□ 0.35
RNF40O75150 AC006486.2-201ENST00000624246 2199 ntBASIC17.22■□□□□ 0.35
RNF40O75150 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF40O75150 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF40O75150 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC17.22■□□□□ 0.35
RNF40O75150 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC17.22■□□□□ 0.35
RNF40O75150 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF40O75150 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF40O75150 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF40O75150 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF40O75150 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.22■□□□□ 0.35
RNF40O75150 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.22■□□□□ 0.35
RNF40O75150 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC17.22■□□□□ 0.35
RNF40O75150 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF40O75150 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF40O75150 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.22■□□□□ 0.35
RNF40O75150 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.22■□□□□ 0.35
RNF40O75150 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.22■□□□□ 0.35
RNF40O75150 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF40O75150 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF40O75150 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF40O75150 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF40O75150 AC104581.4-201ENST00000623126 3052 ntBASIC17.22■□□□□ 0.35
RNF40O75150 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
RNF40O75150 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF40O75150 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF40O75150 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF40O75150 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF40O75150 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF40O75150 RN7SL832P-201ENST00000607781 1756 ntBASIC17.22■□□□□ 0.35
RNF40O75150 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF40O75150 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms