Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
MSH5O43196 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC22.27■■□□□ 1.16
MSH5O43196 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH5O43196 MTCO1P22-201ENST00000604619 1360 ntBASIC22.27■■□□□ 1.16
MSH5O43196 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC22.27■■□□□ 1.16
MSH5O43196 CASC19-280ENST00000642102 1351 ntBASIC22.27■■□□□ 1.16
MSH5O43196 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH5O43196 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
MSH5O43196 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC22.27■■□□□ 1.16
MSH5O43196 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
MSH5O43196 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC22.27■■□□□ 1.16
MSH5O43196 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC22.27■■□□□ 1.16
MSH5O43196 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC22.27■■□□□ 1.16
MSH5O43196 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
MSH5O43196 AC003669.1-201ENST00000334569 611 ntBASIC22.27■■□□□ 1.16
MSH5O43196 BNIP1-203ENST00000352523 1143 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
MSH5O43196 MBP-202ENST00000355994 2772 ntTSL 5 BASIC22.27■■□□□ 1.16
MSH5O43196 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH5O43196 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
MSH5O43196 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC22.27■■□□□ 1.16
MSH5O43196 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC22.27■■□□□ 1.16
MSH5O43196 MTND4LP7-201ENST00000431728 294 ntBASIC22.27■■□□□ 1.16
MSH5O43196 AC060834.1-201ENST00000443027 2032 ntBASIC22.27■■□□□ 1.16
MSH5O43196 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC22.27■■□□□ 1.16
MSH5O43196 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC22.27■■□□□ 1.16
MSH5O43196 AC007386.1-201ENST00000455212 582 ntBASIC22.27■■□□□ 1.16
MSH5O43196 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC22.27■■□□□ 1.16
MSH5O43196 AC067863.1-201ENST00000494933 530 ntBASIC22.27■■□□□ 1.16
MSH5O43196 CIR1P1-201ENST00000524055 1133 ntBASIC22.27■■□□□ 1.16
MSH5O43196 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
MSH5O43196 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH5O43196 AC011773.4-201ENST00000562577 487 ntTSL 2 BASIC22.27■■□□□ 1.16
MSH5O43196 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC22.27■■□□□ 1.16
MSH5O43196 MED16-214ENST00000617672 554 ntTSL 5 BASIC22.27■■□□□ 1.16
MSH5O43196 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH5O43196 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH5O43196 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC22.26■■□□□ 1.15
MSH5O43196 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH5O43196 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH5O43196 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH5O43196 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH5O43196 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH5O43196 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
MSH5O43196 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH5O43196 PHGDH-209ENST00000641074 1780 ntBASIC22.26■■□□□ 1.15
MSH5O43196 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH5O43196 AP002414.1-201ENST00000391405 1147 ntBASIC22.26■■□□□ 1.15
MSH5O43196 LINC00525-201ENST00000412730 1188 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH5O43196 LINC00333-201ENST00000446314 613 ntTSL 5 BASIC22.26■■□□□ 1.15
MSH5O43196 TMPRSS11CP-201ENST00000453277 683 ntBASIC22.26■■□□□ 1.15
MSH5O43196 OARD1-208ENST00000469104 704 ntTSL 2 BASIC22.26■■□□□ 1.15
MSH5O43196 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC22.26■■□□□ 1.15
MSH5O43196 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC22.26■■□□□ 1.15
MSH5O43196 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC22.26■■□□□ 1.15
MSH5O43196 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC22.26■■□□□ 1.15
MSH5O43196 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC22.26■■□□□ 1.15
MSH5O43196 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC22.26■■□□□ 1.15
MSH5O43196 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC22.26■■□□□ 1.15
MSH5O43196 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC22.26■■□□□ 1.15
MSH5O43196 AC005225.4-201ENST00000557330 545 ntBASIC22.26■■□□□ 1.15
MSH5O43196 MTCYBP33-201ENST00000575007 1130 ntBASIC22.26■■□□□ 1.15
MSH5O43196 CYB561-216ENST00000582297 897 ntTSL 3 BASIC22.26■■□□□ 1.15
MSH5O43196 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC22.26■■□□□ 1.15
MSH5O43196 AC107982.3-201ENST00000584957 985 ntBASIC22.26■■□□□ 1.15
MSH5O43196 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
MSH5O43196 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC22.26■■□□□ 1.15
MSH5O43196 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH5O43196 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH5O43196 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH5O43196 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC22.26■■□□□ 1.15
MSH5O43196 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH5O43196 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH5O43196 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
MSH5O43196 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH5O43196 MTND5P23-201ENST00000430812 1655 ntBASIC22.26■■□□□ 1.15
MSH5O43196 ACBD7-201ENST00000356189 1322 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
MSH5O43196 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH5O43196 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC22.26■■□□□ 1.15
MSH5O43196 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH5O43196 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
MSH5O43196 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH5O43196 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH5O43196 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH5O43196 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH5O43196 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH5O43196 AC092919.2-201ENST00000623631 1645 ntBASIC22.25■■□□□ 1.15
MSH5O43196 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC22.25■■□□□ 1.15
MSH5O43196 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
MSH5O43196 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC22.25■■□□□ 1.15
MSH5O43196 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH5O43196 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH5O43196 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH5O43196 BASP1P1-201ENST00000430708 665 ntBASIC22.25■■□□□ 1.15
MSH5O43196 Z84478.1-201ENST00000438230 1219 ntBASIC22.25■■□□□ 1.15
MSH5O43196 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC22.25■■□□□ 1.15
MSH5O43196 CXCL1P1-201ENST00000502804 216 ntBASIC22.25■■□□□ 1.15
MSH5O43196 AC008443.6-204ENST00000511517 738 ntTSL 2 BASIC22.25■■□□□ 1.15
MSH5O43196 MTND5P13-201ENST00000513046 1079 ntBASIC22.25■■□□□ 1.15
MSH5O43196 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC22.25■■□□□ 1.15
MSH5O43196 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms