Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC12.86□□□□□ -0.35
HMGB3O15347 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
HMGB3O15347 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC12.86□□□□□ -0.35
HMGB3O15347 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HMGB3O15347 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC12.86□□□□□ -0.35
HMGB3O15347 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
HMGB3O15347 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC12.85□□□□□ -0.35
HMGB3O15347 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC12.85□□□□□ -0.35
HMGB3O15347 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
HMGB3O15347 POR-201ENST00000394893 2532 ntTSL 5 BASIC12.85□□□□□ -0.35
HMGB3O15347 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
HMGB3O15347 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
HMGB3O15347 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC12.85□□□□□ -0.35
HMGB3O15347 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC12.85□□□□□ -0.35
HMGB3O15347 AL137013.1-201ENST00000432946 1228 ntBASIC12.85□□□□□ -0.35
HMGB3O15347 AC092647.4-201ENST00000457211 535 ntBASIC12.85□□□□□ -0.35
HMGB3O15347 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 ABR-204ENST00000543210 1049 ntTSL 2 BASIC12.85□□□□□ -0.35
HMGB3O15347 ABR-217ENST00000572441 563 ntTSL 4 BASIC12.85□□□□□ -0.35
HMGB3O15347 MIR4492-201ENST00000581627 80 ntBASIC12.85□□□□□ -0.35
HMGB3O15347 CYB561-217ENST00000582997 877 ntTSL 5 BASIC12.85□□□□□ -0.35
HMGB3O15347 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC12.85□□□□□ -0.35
HMGB3O15347 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC12.85□□□□□ -0.35
HMGB3O15347 TACC2-229ENST00000515603 9101 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
HMGB3O15347 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC12.85□□□□□ -0.35
HMGB3O15347 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC12.85□□□□□ -0.35
HMGB3O15347 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC12.85□□□□□ -0.35
HMGB3O15347 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HMGB3O15347 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
HMGB3O15347 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC12.84□□□□□ -0.35
HMGB3O15347 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC12.84□□□□□ -0.35
HMGB3O15347 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
HMGB3O15347 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC12.84□□□□□ -0.35
HMGB3O15347 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC12.84□□□□□ -0.35
HMGB3O15347 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC12.84□□□□□ -0.35
HMGB3O15347 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC12.84□□□□□ -0.35
HMGB3O15347 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
HMGB3O15347 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
HMGB3O15347 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
HMGB3O15347 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 PLEC-210ENST00000527096 13713 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
HMGB3O15347 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
HMGB3O15347 FUOM-202ENST00000368551 628 ntTSL 3 BASIC12.84□□□□□ -0.35
HMGB3O15347 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC12.84□□□□□ -0.35
HMGB3O15347 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC12.84□□□□□ -0.35
HMGB3O15347 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC12.84□□□□□ -0.35
HMGB3O15347 VENTXP7-201ENST00000475503 772 ntBASIC12.84□□□□□ -0.35
HMGB3O15347 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC12.84□□□□□ -0.35
HMGB3O15347 AP005901.3-202ENST00000581653 237 ntBASIC12.84□□□□□ -0.35
HMGB3O15347 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC12.84□□□□□ -0.35
HMGB3O15347 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC12.84□□□□□ -0.35
HMGB3O15347 SIGLEC29P-201ENST00000599873 1114 ntBASIC12.84□□□□□ -0.35
HMGB3O15347 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
HMGB3O15347 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 DLGAP1-203ENST00000400147 5258 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 DLGAP1-206ENST00000400155 5257 ntTSL 2 BASIC12.84□□□□□ -0.35
HMGB3O15347 GSN-215ENST00000545652 2428 ntTSL 2 BASIC12.84□□□□□ -0.35
HMGB3O15347 CICP23-201ENST00000605013 2741 ntBASIC12.84□□□□□ -0.35
HMGB3O15347 PASK-203ENST00000403638 5161 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC12.84□□□□□ -0.35
HMGB3O15347 PCNX2-203ENST00000344698 5348 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
HMGB3O15347 CAMK2A-201ENST00000348628 5322 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
HMGB3O15347 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HMGB3O15347 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms