Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC19.98■□□□□ 0.79
NPHP1O15259 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC19.98■□□□□ 0.79
NPHP1O15259 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC19.98■□□□□ 0.79
NPHP1O15259 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC19.98■□□□□ 0.79
NPHP1O15259 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
NPHP1O15259 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 AC099336.1-201ENST00000417053 1171 ntBASIC19.98■□□□□ 0.79
NPHP1O15259 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 AC068587.3-201ENST00000526613 355 ntBASIC19.98■□□□□ 0.79
NPHP1O15259 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC19.98■□□□□ 0.79
NPHP1O15259 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC19.98■□□□□ 0.79
NPHP1O15259 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC19.98■□□□□ 0.79
NPHP1O15259 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC19.98■□□□□ 0.79
NPHP1O15259 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC19.98■□□□□ 0.79
NPHP1O15259 AC084346.2-201ENST00000607097 949 ntBASIC19.98■□□□□ 0.79
NPHP1O15259 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC19.98■□□□□ 0.79
NPHP1O15259 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC19.98■□□□□ 0.79
NPHP1O15259 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC19.98■□□□□ 0.79
NPHP1O15259 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.97■□□□□ 0.79
NPHP1O15259 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
NPHP1O15259 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC19.97■□□□□ 0.79
NPHP1O15259 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
NPHP1O15259 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
NPHP1O15259 AC022211.2-201ENST00000585075 2527 ntBASIC19.97■□□□□ 0.79
NPHP1O15259 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.97■□□□□ 0.79
NPHP1O15259 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC19.97■□□□□ 0.79
NPHP1O15259 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC19.97■□□□□ 0.79
NPHP1O15259 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 MIR1908-201ENST00000410394 80 ntBASIC19.97■□□□□ 0.79
NPHP1O15259 USB1-202ENST00000423271 1217 ntTSL 2 BASIC19.97■□□□□ 0.79
NPHP1O15259 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC19.97■□□□□ 0.79
NPHP1O15259 RPL13P2-201ENST00000440687 659 ntBASIC19.97■□□□□ 0.79
NPHP1O15259 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC19.97■□□□□ 0.79
NPHP1O15259 CSF2RBP1-201ENST00000447905 391 ntBASIC19.97■□□□□ 0.79
NPHP1O15259 NME4-207ENST00000450036 985 ntTSL 3 BASIC19.97■□□□□ 0.79
NPHP1O15259 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC19.97■□□□□ 0.79
NPHP1O15259 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC19.97■□□□□ 0.79
NPHP1O15259 MIR6787-201ENST00000616675 61 ntBASIC19.97■□□□□ 0.79
NPHP1O15259 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC19.97■□□□□ 0.79
NPHP1O15259 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC19.97■□□□□ 0.79
NPHP1O15259 INTS4P2-202ENST00000614726 2019 ntBASIC19.97■□□□□ 0.79
NPHP1O15259 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NPHP1O15259 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP1O15259 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC19.96■□□□□ 0.79
NPHP1O15259 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
NPHP1O15259 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
NPHP1O15259 HNRNPA1P48-201ENST00000562726 1377 ntBASIC19.96■□□□□ 0.79
NPHP1O15259 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP1O15259 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
NPHP1O15259 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP1O15259 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP1O15259 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP1O15259 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
NPHP1O15259 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC19.96■□□□□ 0.79
NPHP1O15259 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP1O15259 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
NPHP1O15259 BCYRN1-201ENST00000418539 200 ntBASIC19.96■□□□□ 0.79
NPHP1O15259 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC19.96■□□□□ 0.79
NPHP1O15259 ENPP7P5-201ENST00000541031 1031 ntBASIC19.96■□□□□ 0.79
NPHP1O15259 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms