Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 AC091271.1-201ENST00000611877 1162 ntBASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 AD000864.1-201ENST00000624076 2295 ntBASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 TPO-206ENST00000382269 1155 ntTSL 5 BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 RIT1-205ENST00000539040 919 ntTSL 2 BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 AC005252.2-201ENST00000624630 1141 ntBASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 AL592424.1-201ENST00000563624 1536 ntBASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
PCDHGA1Q9Y5H4 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 AGER-203ENST00000375065 665 ntTSL 2 BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 AC026954.1-201ENST00000429771 1293 ntBASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 AC022137.2-201ENST00000503482 481 ntBASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 AC000095.1-201ENST00000603208 874 ntBASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 AC009542.2-202ENST00000619004 1067 ntBASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCDHGA1Q9Y5H4 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.21■□□□□ 0.02
PCDHGA1Q9Y5H4 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PCDHGA1Q9Y5H4 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.02
PCDHGA1Q9Y5H4 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.21■□□□□ 0.02
PCDHGA1Q9Y5H4 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PCDHGA1Q9Y5H4 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms