Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 POLD2P1-201ENST00000511220 997 ntBASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 COQ9-214ENST00000567933 882 ntTSL 3 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 AC087481.3-201ENST00000602886 1894 ntBASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 CYP4F24P-201ENST00000586049 1580 ntBASIC14.39□□□□□ -0.11
HIF3AQ9Y2N7 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 AC018892.3-201ENST00000623986 2499 ntBASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 HTR5BP-201ENST00000430851 1154 ntBASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 AC069335.1-201ENST00000489972 472 ntBASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 AC026979.3-201ENST00000607315 403 ntBASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 AC090616.6-203ENST00000579186 1945 ntBASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 AL596257.1-201ENST00000641463 2694 ntBASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
HIF3AQ9Y2N7 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HIF3AQ9Y2N7 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms